FC932232

Overview
NameFC932232
Unique NameFC932232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15506 contig Ccv1_Contig15506:2..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_ARATH (Probable phenylalanyl-tRNA synthetase alpha chain OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3)

HSP 1 Score: 336.65 bits (862), Expect = 7.278e-92
Identity = 167/206 (81.07%), Postives = 182/206 (88.35%), Query Frame = 1
Query:   73 MAEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQVSRKVQNVEDKVKDLLLQVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHAK 690
            MAEEAILG+L+ NEQI+DSG F+AE   DHN++VNVIKSLHGFRYID QDIK+ETW+LT EGKKYAAEGSPEVQLFLAVP EGSISKDELQKKL PAVFKIGCSQAGKNKWVEMGKQVSRKV++VEDKVK  LLQ+Q G    KE I+SLKARKLIVPQ WKGYSV+KGPNYAP+RKK ATDLTRENLQ  +WKELEFKEY   AK
Sbjct:    1 MAEEAILGFLQNNEQITDSGQFSAEFNIDHNELVNVIKSLHGFRYIDVQDIKKETWILTDEGKKYAAEGSPEVQLFLAVPEEGSISKDELQKKLAPAVFKIGCSQAGKNKWVEMGKQVSRKVKDVEDKVKGQLLQIQQGKEFDKESINSLKARKLIVPQIWKGYSVKKGPNYAPERKKVATDLTRENLQ--NWKELEFKEYNFKAK 204          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_DANRE (Phenylalanyl-tRNA synthetase alpha chain OS=Danio rerio GN=farsa PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29
Identity = 81/211 (38.39%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   82 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            EA+L  +E+ +   DS + +A  G DH  VV  +KSL      I A+    + W LTGEG++ A +GS E ++F A+PAEG + +++L K    A  K+G S+A  NKW+ +      G +V R V+++ED V+D L  VQNG +  L ++E + LK RKL+   T K Y + KG +++    K  T+LT E +  G+WKE +FK Y   A
Sbjct:    8 EALLQRVEQLDGGVDSQDVSAALGVDHQLVVGAVKSLQALGEVISAEQKSSKHWELTGEGREIAEQGSHEARVFNAIPAEG-LPQNQLMKM---ASGKVGFSKAMSNKWIRLDKAHEGGPRVFRTVESIEDTVRDKLQLVQNGQSAKLEEKEKNELKKRKLLAEVTVKSYWITKGNSFSTTITKQETELTPEMIASGNWKEKKFKPYNFEA 214          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_CHICK (Phenylalanyl-tRNA synthetase alpha chain OS=Gallus gallus GN=FARSA PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 80/220 (36.36%), Postives = 116/220 (52.73%), Query Frame = 1
Query:   67 SAMAEEAILGYLEKNEQISDSG----NFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQ--NGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            S    E +L  LE+     + G      AA  G DH  +V  +KSL      I+A+      W L+ EG++   +GSPEV+LF +VP+EG    D +  KL  A  ++G S+A  NKW+ +      G ++ R V  V+D V+  L QVQ  NG +LS+ E + LK RKL++  T K Y +RKG  ++    +  TDLT E +  G W++L FK Y   A
Sbjct:    2 SPSVAELLLQRLERTPPGPEGGLCSLEAAAALGLDHQTLVGAVKSLQALGEVIEAETRATTRWELSAEGEEVLRDGSPEVRLFRSVPSEGLPQSDAM--KLPGA--QVGFSKAMANKWLRLDKGAPGGPRIFRAVDAVQDVVQSSLRQVQEGNGGSLSERERTDLKRRKLLLEVTLKSYWIRKGSAFSTAVVRQETDLTPEMIATGSWRKLPFKAYNFSA 217          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_HUMAN (Phenylalanyl-tRNA synthetase alpha chain OS=Homo sapiens GN=FARSA PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 75/211 (35.55%), Postives = 114/211 (54.03%), Query Frame = 1
Query:   82 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            E +L  LE ++   DS   AAE G +H  VV  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +++ EL +       K+G S+A  NKW+ +      G +V R V ++ED+V+  L  V+ G A  L ++E S L+ RKL+   T K Y V KG  ++    K  T+L+ E +  G W++  FK Y   A
Sbjct:    8 ELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEG-LAQSELMRLPSG---KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLA 214          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_RAT (Phenylalanyl-tRNA synthetase alpha chain OS=Rattus norvegicus GN=Farsa PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 71/219 (32.42%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   73 MAEEAILGYLEKNEQISDSG----NFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHAK 690
            MA+  +L  L +  +++D G      A + G +H  VV  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +  + +Q        K+G S+A  NKW+ +      G +V R V ++ED+V+  L QVQ G A  L+++E + L+ RKL+     K Y V KG  ++    K   +L+ E +  G W++  FK Y   A+
Sbjct:    1 MADNPVLEQLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMQLPSG----KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQRRLQQVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKGFSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSAR 215          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_PONAB (Phenylalanyl-tRNA synthetase alpha chain OS=Pongo abelii GN=FARSA PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 74/211 (35.07%), Postives = 113/211 (53.55%), Query Frame = 1
Query:   82 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            E +L  LE ++   DS   AAE G +H  VV  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +++ EL +       K+G S+A  NKW+ +      G +V R V ++ED+V+  L  V+ G A  L ++E S L+ RKL+     K Y V KG  ++    K  T+L+ E +  G W++  FK Y   A
Sbjct:    8 ELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKRWELTAEGEEIAREGSHEARVFRSIPPEG-LAQSELMRLPSG---KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVILKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLA 214          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_MOUSE (Phenylalanyl-tRNA synthetase alpha chain OS=Mus musculus GN=Farsa PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 69/219 (31.51%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   73 MAEEAILGYLEKNEQISDSG----NFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHAK 690
            MA+  +L  L +  +++D G      A + G +H  VV  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +  + +         K+G S+A  NKW+ +      G +V R V ++ED+V+  L  VQ G A  L+++E + L+ RKL+     K Y V KG  ++    K   +L+ E +  G W++  FK Y   A+
Sbjct:    1 MADNPVLELLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMHLPSG----KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQKRLQLVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKAFSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSAR 215          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFAA_XENLA (Phenylalanyl-tRNA synthetase alpha chain A OS=Xenopus laevis GN=farsa-A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 66/197 (33.50%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  124 DSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            DS   AA  G +H  VV  +KSL      I A+    + W L+ EG++   EGS E ++F  +P EG +    +++       K+G S+A  NKW+ +      G ++ R V ++ED VK+ L  +  G A  +++++ + LK RKL+   T K Y V KG  ++    K  TDLT E +  G W+E +FK Y   A
Sbjct:   23 DSLELAALLGVEHQQVVGAVKSLQCLGEIIQAEQRSSKKWELSSEGEEIGREGSHEARVFQTLPKEGLLQAQLMKQPFS----KVGFSKAMSNKWIRLDKAAEGGPRIYRVVDSIEDTVKEKLQLILKGRADDVNEKDRNELKKRKLVNEVTVKSYWVTKGSGFSTSITKQETDLTPEMIASGSWREKQFKGYNFDA 215          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFAB_XENLA (Phenylalanyl-tRNA synthetase alpha chain B OS=Xenopus laevis GN=farsa-B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 69/197 (35.03%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  124 DSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQ------VSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            D+   AA    DH  VV  +KSL      I+A+    + W L+ EG++ A  GS E ++F ++P EG +  + +  KL  A  K+G S+A  NKW+ + K       V R V+ +ED VK+ L  +  G A  +++++ + LK RKL+   T K Y V KG  ++    K  TDLT E +  G W+E +FK Y  +A
Sbjct:   23 DTLELAAVLSVDHQQVVGAVKSLQCLGEIIEAEQRSSKKWELSSEGEEIAQVGSHEARVFQSLPKEGLLQAELM--KLPFA--KVGFSKAMSNKWIRLDKAAAGGPCVYRVVETIEDTVKEKLQLILKGRADDVNEKDKNELKKRKLVNEVTVKSYWVTKGSGFSTSITKQETDLTPEMIASGSWREKQFKGYNFNA 215          
BLAST of FC932232 vs. ExPASy Swiss-Prot
Match: SYFA_DROME (Probable phenylalanyl-tRNA synthetase alpha chain OS=Drosophila melanogaster GN=CG2263 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 71/211 (33.65%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   82 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSL--HGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQVS-----RKVQNVEDKVKDLLLQVQ--NGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYKLHA 687
            E IL +LE  ++ +D+ + AA    DH  +V  +KS+  HG   + A+ +  ++  LT EG+     GS E  ++  VP EG I++  L      A  K+G S+A  + W+ + K V+     RKV  + D V++ L QV    G  L  +E++  K RKL+   T K + + +GP +A    K  TDLT E L  G W +L+FK Y   A
Sbjct:    7 ERILQHLETTDK-ADTLDLAALFAEDHQKIVGSLKSIQAHG-ELVTAETVTHKSLGLTDEGRAVVENGSHEALVYDLVPPEG-IAQAALMAA-GGANAKVGFSKAMSHGWILVDKSVTPPLVRRKVDTITDVVRNQLQQVALGKGDQLPAKEVADFKKRKLLQETTTKSFVLARGPEFATTLTKLETDLTVEMLANGLWDQLKFKAYNFDA 213          
The following BLAST results are available for this feature:
BLAST of FC932232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SYFA_ARATH7.278e-9281.07Probable phenylalanyl-tRNA synthetase alpha chain ... [more]
SYFA_DANRE1.765e-2938.39Phenylalanyl-tRNA synthetase alpha chain OS=Danio ... [more]
SYFA_CHICK6.939e-2636.36Phenylalanyl-tRNA synthetase alpha chain OS=Gallus... [more]
SYFA_HUMAN1.309e-2435.55Phenylalanyl-tRNA synthetase alpha chain OS=Homo s... [more]
SYFA_RAT2.915e-2432.42Phenylalanyl-tRNA synthetase alpha chain OS=Rattus... [more]
SYFA_PONAB4.973e-2435.07Phenylalanyl-tRNA synthetase alpha chain OS=Pongo ... [more]
SYFA_MOUSE9.379e-2331.51Phenylalanyl-tRNA synthetase alpha chain OS=Mus mu... [more]
SYFAA_XENLA9.379e-2333.50Phenylalanyl-tRNA synthetase alpha chain A OS=Xeno... [more]
SYFAB_XENLA3.564e-2235.03Phenylalanyl-tRNA synthetase alpha chain B OS=Xeno... [more]
SYFA_DROME6.291e-1933.65Probable phenylalanyl-tRNA synthetase alpha chain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206A08EF PostHarveN Citrus clementina cDNA clone C34206A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932232 ID=FC932232; Name=FC932232; organism=Citrus clementina; type=EST; length=691bp
GGATCTGGAAACACTAATCAGAGAGTCACAGAGCGCAACAGCTGACTCTC
CCATTAGAGCGGCGGCAGCGCCATGGCCGAAGAGGCGATTCTAGGGTACT
TAGAGAAGAATGAGCAAATCTCGGATTCTGGTAACTTCGCCGCCGAACGC
GGGTTTGATCATAACGACGTCGTTAATGTCATCAAAAGCCTCCACGGTTT
CCGTTACATCGATGCACAGGACATTAAGAGGGAGACGTGGGTGCTTACCG
GTGAGGGTAAGAAGTATGCTGCTGAAGGGTCACCCGAGGTTCAATTGTTC
TTGGCAGTGCCAGCGGAGGGTAGTATCTCGAAAGACGAATTGCAGAAAAA
GCTTGATCCTGCAGTTTTCAAAATAGGTTGCTCCCAGGCTGGTAAAAATA
AGTGGGTGGAGATGGGGAAGCAAGTTTCGAGGAAGGTTCAAAATGTGGAA
GACAAAGTCAAAGATTTGCTTCTACAAGTACAAAATGGACATGCGCTTAG
CAAAGAGGAGATTAGCAGTCTCAAAGCACGGAAGCTTATTGTTCCCCAGA
CATGGAAGGGGTACTCAGTGAGAAAAGGTCCTAATTATGCTCCCAAAAGG
AAGAAAGCTGCTACAGATTTGACTCGAGAGAACCTTCAGAAGGGTGATTG
GAAGGAATTGGAGTTCAAAGAGTACAAACTTCATGCTAAAG
back to top