FC932246

Overview
NameFC932246
Unique NameFC932246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932246_ssr135 microsatellite FC932246_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932246 vs. ExPASy Swiss-Prot
Match: BL1S1_ARATH (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=At2g30330 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 52/84 (61.90%), Postives = 70/84 (83.33%), Query Frame = 2
Query:  179 IQNHQHSSLKLREQTERAKRYSVRHAERVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVK 430
            I +++ SSL+LRE+TER+++ ++RHA R +DLL  A+NGGV+E +V EKRIE EIR LA T+AKF KQTDQWLA +HA+N+AVK
Sbjct:   38 IDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVK 121          
The following BLAST results are available for this feature:
BLAST of FC932246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BL1S1_ARATH1.675e-2361.90Biogenesis of lysosome-related organelles complex ... [more]
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Properties
Property NameValue
Genbank descriptionC34206C06EF PostHarveN Citrus clementina cDNA clone C34206C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932246 ID=FC932246; Name=FC932246; organism=Citrus clementina; type=EST; length=751bp
GAGGAAAACAGGCAAAAGCAAAGGCATTCCCAAAATTCCAGAAAGAAAAC
CCATGTCGTCCCCACCGCAGGTTCCCCCGGCGAGTACGCGCGTGCAAGCC
ACGGCGGAGACGGAGAAAGCCCAGGCCGATACAACAGCAGCAGCAGCAGG
AGGTCTAGAAGCTTCGCTTCTGCAACTGATCCAGAATCACCAGCATTCGT
CTCTCAAACTCCGCGAGCAGACAGAGAGAGCCAAGAGATATTCCGTTCGG
CACGCCGAGAGGGTGTCGGATTTATTGACGGATGCATTGAACGGAGGGGT
GCAGGAGTCTTACGTTATCGAGAAAAGAATCGAGCTCGAAATTCGAACGC
TAGCGGCCACGATTGCCAAATTCATGAAGCAAACCGATCAGTGGCTTGCC
ACCTCTCATGCTATCAACACTGCCGTCAAGGTTCCTCTTCTTTCTTCTTC
CCTAATTTTTTCTATACCCAGTTTGACGAAATGATGATAGAGACCCTTTA
TTTTCACAAAGAGAGTAACACTCGTTTCTGACAGCTTACTGTTCAAATAT
TAAACCATAGCATATAATACACACACATAGCAATTATGGTTTTGTTTGGT
AATAGGAAATTGGAGACTTTGAGAACTGGATGAAGACAATGGACCTGGAT
TGTAAAAGCATTTACGCTGNCATTCGCAACATCTACCAAGATTGAGCTTT
TTTCATACATCATGTGTCTTCTTTGCAGCTACTGTATTTACATTTTCTAA
T
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