FC932250

Overview
NameFC932250
Unique NameFC932250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932250_ssr122 microsatellite FC932250_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14196 contig Ccv1_Contig14196:36..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.658e-71
Identity = 139/216 (64.35%), Postives = 162/216 (75.00%), Query Frame = 2
Query:   44 MAFKHLLTLARRSHR-------PSSTALFTAIRXXXXXXXXXXXXXXXXXXXXXXNVMIYDRLAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQAR 670
            MA K+LL+LARRS R         S++ F+AI                       ++M YD  AE +K K+K LENPD +FLKY SPHP L SH HIL+APET++ TLPNGLRVATESNL+AKTATVGVWIDAGSRFE+DETNGTAHFLEHMIFKGT++RT R LEEEIE++GGHLNAYTSREQTTYYAKVLD +V  ALD+LADILQNS F++ R
Sbjct:    1 MAMKNLLSLARRSQRRLFLTQATRSSSSFSAI------DSVPASASPTALSPPPPHLMPYDHAAEIIKNKIKKLENPDKRFLKYASPHPILASHNHILSAPETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQR 210          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.777e-39
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFD 661
            +L  P+T++  LPNGL VATESN A  TATVGVWID+GSR ET   NG AHFLEH+ FKGT++RT   LE EIENMGGHLNAYTSREQT YYAK+  +DV   ++IL DILQNST D
Sbjct:   29 LLNVPKTQVTRLPNGLTVATESNPALATATVGVWIDSGSRAETKANNGVAHFLEHISFKGTKQRTQSGLEIEIENMGGHLNAYTSREQTVYYAKLFSQDVAKGVNILGDILQNSTLD 145          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            +L  PET++  L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEA 169          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.955e-38
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 2
Query:  323 PETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFD 661
            P T+I+TL NGL VATES   A+TATVGVWIDAGSR ETD+TNGTAHFLEHM FKGT +R+   LE E+EN+G HLNAYTSREQT YYAK   KDV  A+DI++DILQNS  +
Sbjct:   27 PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRRSQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLE 139          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.554e-38
Identity = 78/119 (65.55%), Postives = 94/119 (78.99%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            +L  PET++  L NGLRVA+E +  A T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A
Sbjct:   53 VLNVPETRVTCLENGLRVASEDSGLA-TCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEA 170          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.335e-38
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            +L  PET++  L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   +D+  A++ILADI+QNST  +A
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEA 169          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.430e-38
Identity = 87/153 (56.86%), Postives = 109/153 (71.24%), Query Frame = 2
Query:  209 LAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            LA+ VKA+   + NP  + L   +PH    S T I    +T+  TL NGL VA++ +  A+T+TVG+WIDAGSR ETDETNGTAHFLEH+ FKGT KRT + LE EIENMG HLNAYTSRE T Y+AK L++DV   +DIL DILQNS  +++
Sbjct:   10 LAQGVKARAGGVINPFRRGL--ATPH----SGTGI----KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRTQQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEES 152          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.704e-38
Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            +L  PET++  L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEA 169          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.704e-38
Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            +L  PET++  L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEA 169          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.689e-35
Identity = 74/120 (61.67%), Postives = 93/120 (77.50%), Query Frame = 2
Query:  305 THILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKR-TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFD 661
            +++  +PETKI TL NG+RVATE     + A+VGVW+D+GS +ETD+ NG AHFLEHMIFKGT KR T + +E EIENMGG LNA+TSRE + YY KVL  +V  A+DIL+DILQNS F+
Sbjct:   27 SYLKISPETKITTLSNGIRVATEQTYG-EVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFE 145          
The following BLAST results are available for this feature:
BLAST of FC932250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MPPB_ARATH6.658e-7164.35Probable mitochondrial-processing peptidase subuni... [more]
MPPB_BLAEM8.777e-3967.52Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT1.497e-3865.55Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED1.955e-3869.91Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN2.554e-3865.55Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE3.335e-3864.71Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR7.430e-3856.86Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB9.704e-3863.87Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN9.704e-3863.87Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI7.689e-3561.67Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionC34206D02EF PostHarveN Citrus clementina cDNA clone C34206D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932250 ID=FC932250; Name=FC932250; organism=Citrus clementina; type=EST; length=672bp
GGTGAAAAGGAAACTCGAGACTTATCATCAGTGAGTCCAAACGATGGCGT
TTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACG
GCCCTCTTTACCGCCATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCAC
GTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCT
ACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAAC
CCCGACCCGAAGTTCTTAAAGTACGGATCCCCGCACCCAACCCTTACTTC
CCACACGCACATCCTCGCTGCGCCGGAGACCAAAATCGCGACTTTGCCTA
ACGGACTCCGCGTCGCCACCGAGTCGAACCTCGCCGCGAAGACGGCCACA
GTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCGAGACTGATGAGACGAA
CGGGACGGCTCATTTCTTGGAGCATATGATATTCAAGGGGACGGAGAAGC
GGACTGCGAGAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTG
AATGCTTACACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGA
TAAGGATGTGAAATATGCTTTGGATATTTTGGCAGATATTTTGCAGAACT
CGACGTTTGATCAAGCGAGGAT
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