FC932253

Overview
NameFC932253
Unique NameFC932253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:96..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.674e-73
Identity = 138/178 (77.53%), Postives = 144/178 (80.90%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGK TLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK            +VPFL+LGNKIDIPYAASE+EL YHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRK
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRK 178          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.964e-71
Identity = 136/178 (76.40%), Postives = 142/178 (79.78%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGK TLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK             VPFL+LGNKIDIPYAASE+EL YHLGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRK
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRK 178          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 9.746e-71
Identity = 134/178 (75.28%), Postives = 140/178 (78.65%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGK TLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+             VPFL+LGNKIDIPYAASE+EL YHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRK
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRK 178          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.348e-69
Identity = 130/178 (73.03%), Postives = 139/178 (78.09%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MFL+DWFYGVLASLGLWQK+AKILFLGLDNAGK TLLHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+KK            NVPFL+LGNKIDIPYAASE+EL YHLGL+  TTGKG +NLA +NVRP+EVFMCSIVRK
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRK 178          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.654e-68
Identity = 133/180 (73.89%), Postives = 139/180 (77.22%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLA--DSNVRPLEVFMCSIVRK 618
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGK TLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESKK             VPFL+LGNKID PYAASE+EL YHLGL+NFTTGKGKV  A  DS VRPLEVFMCSIVRK
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRK 180          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.289e-54
Identity = 115/183 (62.84%), Postives = 127/183 (69.40%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGN---KIDIPYAASEE-ELCYHLGLSNFT-TGKGKVNLADSNVRPLEVFMCSIVRK 618
            MFL+DWFYG+LA+LGLWQKEAKILFLGLDNAGK TLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK               FL L N   +I+ P     +    YH+G +  +   +GKVNLADSNVRP+EVFMCSIVR+
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQ 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.361e-46
Identity = 99/178 (55.62%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M++++WFY VL+SLGLW K AK+LFLGLDNAGK TLLHMLK++R+    PT +PTSEELSIG  KF  FDLGGH  ARRVW                    RFAESK              VPFL+LGNKID+P A SE EL   LGL   TTGKGKV L + N+RP+E+FMCSIV +
Sbjct:    1 MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMR 176          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.417e-45
Identity = 96/178 (53.93%), Postives = 119/178 (66.85%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MF+++WF+ +LA LGL  K AKILFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++             +VPFL+LGNKID P A SEEEL   +GL   TTGKGKV L D  +RP+E+FMCS+V +
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMR 175          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45
Identity = 97/178 (54.49%), Postives = 117/178 (65.73%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MF+++WF+ VLASLGL  K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK              VPFL+LGNKID   A SEE+L + LGL   TTGKGK+ L D  +RP+EVFMCS+V +
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMR 175          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.185e-45
Identity = 97/178 (54.49%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M++++WFY VLASLGL  K AK+LFLGLDNAGK TLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+EL + LGL   TTGKGKV L    +RP+EVFMCS+V +
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMR 175          
The following BLAST results are available for this feature:
BLAST of FC932253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1A_ARATH4.674e-7377.53GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.964e-7176.40GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH9.746e-7175.28GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC5.348e-6973.03GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM2.654e-6873.89GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC8.289e-5462.84GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_YARLI6.361e-4655.62Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_USTMA1.417e-4553.93Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_CRYNE5.385e-4554.49Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_NEOFI9.185e-4554.49Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionC34206D05EF PostHarveN Citrus clementina cDNA clone C34206D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932253 ID=FC932253; Name=FC932253; organism=Citrus clementina; type=EST; length=620bp
ACGATCTGATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATC
CGTTTTCGTTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACT
GGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAG
ATCTTGTTTTTAGGGCTTGATAATGCTGGAAAAGCAACGTTGCTTCACAT
GTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACAT
CGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGA
GGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGA
TGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAAT
CAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTT
CCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGA
GGAAGAGTTGTGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGG
GGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATG
TGTAGCATAGTTCGCAAAAT
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