FC932254

Overview
NameFC932254
Unique NameFC932254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4207 contig Ccv1_Contig4207:24..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.766e-91
Identity = 177/203 (87.19%), Postives = 178/203 (87.68%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAA                       SPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQ  I+FAGPLATTS
Sbjct:    1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTS 203          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.115e-55
Identity = 119/204 (58.33%), Postives = 140/204 (68.63%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S++   + R  VL                            P E +EI  LKKALVDSFYGTDRGL  + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL YT+F+GLFPLLSR  LPL +VEEISQTIDSEN TVQ  ++F+GPLATTS
Sbjct:    1 MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISVRPAFKVRA-VLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSR-NLPLVKVEEISQTIDSENLTVQNSVQFSGPLATTS 202          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.023e-54
Identity = 117/206 (56.80%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXS---PKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P    +A                            PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEEISQTIDSE+FTVQ  + FAGPLATTS
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTS 206          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 117/206 (56.80%), Postives = 135/206 (65.53%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXS---PKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P    +A                            PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEEISQTIDSE+FTVQ  + FAGPLATTS
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTS 206          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.487e-44
Identity = 104/203 (51.23%), Postives = 131/203 (64.53%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MA++   NQFPCKT  Q+  +++  SKP   P + V +S    + SF   + F  +R     R                         + + V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPT+AL LLN KWIL YTSF GLFPLLSRG +PL +V+EISQTIDS+NFTV+  + FAGPLATTS
Sbjct:    1 MATVQFFNQFPCKTRVQSSANSKPLSKP---PSSLVPMSALTRRPSFPPGE-FAVSRSDFRVRVIDAEDELDPETSEGGGSALLMAEEAIESVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWILAYTSFVGLFPLLSRGIVPLVKVDEISQTIDSDNFTVENSVLFAGPLATTS 199          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 101/204 (49.51%), Postives = 129/204 (63.24%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +   RA                          ++V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPTEAL LLN KWIL YTSF  LFPLLSRG +PL +V+EISQTIDS+NFTVQ  +RFAGPL T S
Sbjct:    1 MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRVFKVRATDTGEIGSALLAAEEAI---------EDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNS 190          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 101/207 (48.79%), Postives = 126/207 (60.87%), Query Frame = 1
Query:   82 MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPK---EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            MA++    QFPCKTL+ +  + +  SK P +LP+NS+     +         G +  RP    RA                        + K    V E + LK++L DS YGTDRGL+ +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL YTSF GLFPLLSR   PL +V+EISQTIDS++FTVQ  +RFAGP +TTS
Sbjct:    1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSINRRSEI---------GVSVHRPDFKIRATDIDDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTS 198          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.443e-40
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query:  361 TEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLP-LARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            +E+  LK  L ++ YGT+RGL A+SETRAE+VELITQLEA+NPTPAPTEALTLLN KWIL YTSFS LFPLL  G+LP L +VEEISQTIDSENFTVQ  I+F+GPLATTS
Sbjct:   90 SEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTS 200          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.633e-38
Identity = 94/199 (47.24%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  103 NQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRAR--PLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            +QF CKT   +   + F SK P +LP+N +    ++ +  F            P    R                         + +   E + LK+ L  S YGTDRGL+A+SETRAEI ELITQLE+KNP PAP EAL LLN KWILVYTSF GLFPLLSR   PL +V+EISQTIDS++FTV   +RFA PLATTS
Sbjct:    9 SQFTCKTPITSSSTSSFQSKSPILLPINPINRRIAVHRHDFKVRASDVNDEWGPDSKGRGGDVDDEWGPEIGLNSSVAEKVAEEAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYTSFVGLFPLLSRRISPLVKVDEISQTIDSDSFTVHNSVRFASPLATTS 207          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  367 IDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            ++ LK++LVD+ YGT+ G  A SE RAE+ E + QLEA NPTPAP E   LLN  W+L+YT+ S L PLL+ G+LPL ++++ISQTID+++FTV      + P A+ S
Sbjct:  132 LEGLKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVLLYTASSELLPLLAAGSLPLLKLDKISQTIDTDSFTVVNSTTLSSPFASFS 239          
The following BLAST results are available for this feature:
BLAST of FC932254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN2.766e-9187.19Plastid-lipid-associated protein, chloroplastic OS... [more]
CHRC_CUCSA7.115e-5558.33Chromoplast-specific carotenoid-associated protein... [more]
LIPC_SOLDE6.023e-5456.80Light-induced protein, chloroplastic OS=Solanum de... [more]
LIPC_SOLTU1.027e-5356.80Light-induced protein, chloroplastic OS=Solanum tu... [more]
PAP2_BRACM1.487e-4451.23Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH6.247e-4349.51Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH6.247e-4348.79Probable plastid-lipid-associated protein 1, chlor... [more]
PAP2_ORYSJ8.443e-4074.77Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_BRACM4.633e-3847.24Plastid lipid-associated protein 1, chloroplastic ... [more]
PG1_PEA1.546e-2550.93Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]

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Properties
Property NameValue
Genbank descriptionC34206D06EF PostHarveN Citrus clementina cDNA clone C34206D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932254 ID=FC932254; Name=FC932254; organism=Citrus clementina; type=EST; length=692bp
ATTGAAATTGGTTTCTCTGTTTTTCTAGTTCCTCTGTTGGTGAAAACTGT
GTGTTGTAACTGTGTGTTTTTGGAAAAGCTAATGGCTTCAATATCTCAAA
CCAACCAGTTCCCGTGCAAGACTCTTTCACAAAACCCACCACACAATCAG
TTCACCTCGAAGCCTTCAATTCTCCCTTTGAACTCGGTTCGAATTTCACG
GAGTCTCGCCAAGAAATCATTTCTTTCAATCCAAGGATTCACTCGGGCCA
GGCCGCTGGTTCTAACTCGGGCTGCCGATGATGATGAGTGGGGCCCGGAG
AAGGAGAAGGAGGAAGGTGGCGCTCTGGCGGTGGCAGAGGAGGAGAGCCC
AAAAGAAGTTACAGAGATTGATAATTTGAAGAAAGCGCTTGTGGATTCGT
TTTATGGGACCGATCGTGGATTGAATGCCACAAGTGAGACGAGGGCTGAG
ATCGTTGAGCTTATTACGCAGCTTGAGGCTAAGAATCCAACCCCGGCTCC
CACCGAGGCCTTAACTCTGCTAAATGCCAAATGGATTCTTGTGTACACAT
CTTTTTCAGGTTTGTTTCCGTTGTTGTCAAGGGGAACATTGCCATTGGCG
AGGGTGGAGGAGATATCTCAGACAATTGACTCAGAGAACTTCACGGTCCA
GAAACTCATCCGGTTTGCTGGGCCATTGGCTACAACTTCCAT
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