FC932256

Overview
NameFC932256
Unique NameFC932256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig890 contig Ccv1_Contig890:6..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            MAS DVE+RCFVGGLAWAT D +L  AFS YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            A+VE+RCFVGGLAWAT D SL +AFS +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 68/85 (80.00%), Postives = 79/85 (92.94%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            MAS DVE+RCFVGGLAWAT D +L  AF+ YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 68/85 (80.00%), Postives = 79/85 (92.94%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            MAS DVE+RCFVGGLAWAT + SL  AFS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            MA+ADVE+RCFVGGLAWAT++ SL  AF++YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.941e-31
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            ADVE+RCFVGGL WAT D SL  AFS YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 61/82 (74.39%), Postives = 72/82 (87.80%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            ++VE+RCFVGGLAWAT D  L   FS +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.460e-30
Identity = 60/82 (73.17%), Postives = 73/82 (89.02%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            ++VE+RCFVGGLAWAT D+ L   FS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.490e-30
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            MA+ADVE+RCFVGGLAWAT + +L +AF+ +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC932256 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  137 SSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            +SLH AFS YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of FC932256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
GRP1_SINAL2.571e-3582.35Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA3.357e-3585.37Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH5.727e-3580.00Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL2.842e-3480.00Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE7.740e-3275.29Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU2.941e-3176.83Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH1.118e-3074.39Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.460e-3073.17Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI2.490e-3070.59Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI1.239e-2178.13Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34206E01EF PostHarveN Citrus clementina cDNA clone C34206E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932256 ID=FC932256; Name=FC932256; organism=Citrus clementina; type=EST; length=663bp
GGATCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAG
TCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGG
TGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGA
GGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATC
GCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAG
AAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGG
CCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTG
GCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGAA
CGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGG
AGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTG
ACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCT
TCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAG
TTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGT
CGTTTTGATCGGT
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