FC932268

Overview
NameFC932268
Unique NameFC932268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14461 contig Ccv1_Contig14461:101..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932268 vs. ExPASy Swiss-Prot
Match: VAR3_ARATH (Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 1
Query:  337 GKSLEGSAVKELDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRYRRNLPIVSSEPVKK 612
            GKSLEGS VKE D LDMSEEAKAERWF+RVA+IK+ISELS+IPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQR++RN  I +S+P  K
Sbjct:  664 GKSLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRHQRNPHITNSDPTGK 755          

HSP 2 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 66/196 (33.67%), Postives = 96/196 (48.98%), Query Frame = 1
Query:   16 HTENQQLGSGRWNSKSSGENVEGMKTGSSAHETCINTNSTGKNFNSLPTNNKNWSSG-YSGKEMTNSAWNSNQPAENQSNGYSTKENTNFATSTSQPAE-----NQNVRSSWTGKSLEGSAVKELDPLDMSEEAKAE--RWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRYRR 576
            +TEN+    G  NSK S +N  G KT  S +E   +++S         +++KN SS  +   +  N+ +    P  +       KE T      +   +     NQNV      KS    + KE D L+  +    E  RWF+RV ++ ++S+L S IP E  P  MPMRKG NRFVVS++K   +R LTS  Y+R
Sbjct:  417 NTENRVATDG--NSKRSDDNALGSKTTRSLNEILGSSSSLTSR-----SDDKNVSSRRFESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLIDNIQVDGFSGGNQNVYQE--DKSDANHSGKETDRLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKK---DRSLTSPAYKR 600          

HSP 3 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  325 SSWTGKSLEGSAVKELDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRYRRNLPIVSSEPVKKESDSS 627
            SS    + + S+  EL+   +  E KA+RW  +VAQ    +  S   DEDFP IMP+RKGVNR+VVS RK PLERRL +   R     V+++   K SD +
Sbjct:  340 SSLNSANSDYSSDPELERRLVENEKKAQRWLSKVAQGGSDAN-SVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENR-----VATDGNSKRSDDN 434          
The following BLAST results are available for this feature:
BLAST of FC932268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VAR3_ARATH4.522e-3682.61Zinc finger protein VAR3, chloroplastic OS=Arabido... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34206F07EF PostHarveN Citrus clementina cDNA clone C34206F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932268 ID=FC932268; Name=FC932268; organism=Citrus clementina; type=EST; length=706bp
ATGAATGGTGTGCAACATACGGAAAACCAGCAGCTAGGTTCTGGAAGATG
GAACTCAAAATCTTCTGGAGAGAATGTAGAAGGAATGAAGACGGGTAGTT
CAGCTCATGAGACTTGTATCAATACAAATTCAACCGGGAAGAATTTTAAT
AGTCTGCCTACCAACAACAAGAACTGGAGTAGTGGATATTCTGGGAAGGA
GATGACAAATTCAGCTTGGAATTCAAATCAGCCGGCCGAAAACCAGAGTA
ACGGATATTCTACAAAGGAGAATACGAATTTTGCCACGAGTACATCTCAG
CCAGCTGAAAATCAAAATGTTAGAAGTAGCTGGACTGGAAAGAGCCTGGA
GGGGTCAGCAGTGAAGGAACTGGATCCATTAGATATGTCTGAGGAGGCCA
AGGCAGAGAGATGGTTTCGTCGTGTCGCCCAGATCAAGGACATATCAGAG
TTGAGTCAGATCCCAGATGAGGATTTCCCATCAATAATGCCAATGCGGAA
AGGAGTGAACAGGTTTGTTGTAAGCAAGAGGAAAACACCATTAGAAAGGA
GGTTGACATCTCAACGGTATCGAAGAAATCTTCCAATTGTTAGCTCTGAA
CCCGTAAAGAAGGAAAGTGATAGTAGCCGAAGAAACACAGAAGATTTCAA
TTCTGGTATTGTTTAATGTACTCTATGCATATATAAAATATGTTTATGTT
ATCAAA
back to top