FC932272

Overview
NameFC932272
Unique NameFC932272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1B_DICDI (Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 79/235 (33.62%), Postives = 123/235 (52.34%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS-VVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRE-SQKGD-------------------EPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELM 666
            ++++D    E ++ D+  F    ++Y   G  ++RGYLLYGPPGTGKSS I A+A  +   I  LNL+    SD+SL  LL   P RSI+++EDID +I+  N + S K +                    P+ S  G  +T +GLLNA+DG+     + +I   TTN+ +++D  L+R GR+D  I +  C+    +Q+   +    D DL     + +E  K SPA++    M
Sbjct:  208 SVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQYQGYYGNPSVSSGGSALTFSGLLNALDGV--AASEGRILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCSSYQMEQMFLKFYP-TDFDLAKQFVEKLENYKFSPAQLQAYFM 439          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_YEAST (Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae GN=BCS1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.157e-28
Identity = 69/173 (39.88%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCT 540
            ++++D  +KE +L+D+  F +  ++Y   G  ++RGYLLYGPPG+GK+S I A+A  ++Y+I  LNLS    +D  L +L+ ++P RSIL++EDID +    N+ SQ G++   S     VT +GLLNA+DG+     +E IT  TTN+ +++D A++R GR+D  + +   T
Sbjct:  227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAF---NKRSQTGEQGFHS----SVTFSGLLNALDGV--TSSEETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNAT 390          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_SCHPO (Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe GN=SPAC644.07 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 66/193 (34.20%), Postives = 116/193 (60.10%), Query Frame = 1
Query:    7 HPMT---FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV-TSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANY 573
            HP +     ++V++ ++K+ + +D+  F R  ++Y   G  ++RGYLLYGPPG+GK+S + A+A  ++YDI  LNL+    +D  L +LL +VP ++++++ED+D + + + R  + G           VT +GLLNA+DG+     DE+I   TTN+ +++DPAL+R GR+D    L   T    +++   +
Sbjct:  200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFH-------ANVTFSGLLNALDGV--TSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFTRF 383          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1A_DICDI (Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 74/220 (33.64%), Postives = 123/220 (55.91%), Query Frame = 1
Query:   16 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV-TSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI-NDHDLYCHIEKLMEKVKVSPAEVAGELMK 669
            +  ++++  DLK  ++ D+  F   + +YR  G  ++RGYLLYG PG GKSSLI A+A  +N DI  ++LS     D  + +LL + P +SIL++EDID + K         +   +S     +T +GLLNA+DG+     + +I   TTN  + +D AL+R GR+D  I +S  T S   QL  ++ ++  D+ L     + +   ++S +++ G L+K
Sbjct:  185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKSHRDNVDSNNN--NSNNNNSLTYSGLLNALDGV--ASQEGRILFMTTNKIELLDSALIREGRIDLKIKVSNATKSQAAQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLK 400          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_XENLA (Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25
Identity = 73/219 (33.33%), Postives = 120/219 (54.79%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-PQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL---DINDHDLYCHIEKLMEKVKVSPAEVAGELM 666
            ++V++  + E ++ D+  F    ++Y   G  ++RGYLLYGPPG GKSS I A+A  + Y I  ++LS  + SD  L +LL   P +SI+++ED+D +   ++   Q       +Y+G  ++T +GLLNA+DG+     + +I   TTN+ DR+DPAL+R GR+D    + +CT     Q+   +         + +     L    K+S A+V G  M
Sbjct:  190 SVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQN----PTAYQGMGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCTNWQLSQMFLRFYPDQTAGQSEAFAS-AALSSSDKISAAQVQGHFM 401          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_DANRE (Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.279e-25
Identity = 73/218 (33.49%), Postives = 122/218 (55.96%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-PQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHI--EKLMEKVKVSPAEVAGELM 666
            ++V++  + E +++D+  F    ++Y   G  ++RGYLLYGPPG GKSS I A+A  + Y I  ++LS  + SD  L +LL   P +SI+++ED+D +    +RE    + P  +Y+G  ++T +GLLNA+DG+     + +I   TTN+ +R+DPAL+R GR+D    + +C+     Q+   +          H   + L     +S A+V G  M
Sbjct:  190 SVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAA--FVSRELLPTENPL-AYQGMGRLTFSGLLNALDGV--ASSEARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQMFRRFYPQESAAEADHFSEQALAAHTDLSAAQVQGHFM 402          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_MOUSE (Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.612e-24
Identity = 73/218 (33.49%), Postives = 121/218 (55.50%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-PQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKV--KVSPAEVAGELM 666
            ++V+   L + ++ D+  F    ++Y   G  ++RGYLLYGPPG GKSS I A+A  + + I  L+L+  + SD  L +LL   P +S++++ED+D +   ++       E    Y+G  ++T +GLLNA+DG+     + +I   TTNY DR+DPAL+R GR+D    + YC+     Q+   +       L  +  + + K   ++SPA+V G  M
Sbjct:  190 SVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRD----LAVENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLKATSEISPAQVQGYFM 401          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_HUMAN (Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.162e-24
Identity = 74/221 (33.48%), Postives = 120/221 (54.30%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-PQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKV-----KVSPAEVAGELM 666
            ++V+   L + ++ D+  F    ++Y   G  ++RGYLLYGPPG GKSS I A+A  + + I  L+L+  + SD  L +LL   P +S++++ED+D +   ++       E    Y+G  ++T +GLLNA+DG+     + +I   TTN+ DR+DPAL+R GR+D    + YC+     Q+   +       L    E   E V     ++SPA+V G  M
Sbjct:  190 SVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRD----LAVENPVKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSL---AENFAEHVLRATNQISPAQVQGYFM 401          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: BCS1_BOVIN (Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 75/223 (33.63%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   25 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-PQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCT-------FSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELM 666
            ++V++  + E ++ D+  F    ++Y   G  ++RGYLLYGPPG GKSS I A+A  + + I  L+L+  + SD  L +LL   P +S++++ED+D +   ++  +    E    Y+G  ++T +GLLNA+DG+     + +I   TTN+ DR+DPAL+R GR+D    + +C+       F  F    A  L  N  D       L    ++SPA+V G  M
Sbjct:  190 SVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAA----ENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMFQRFYPGQATSLAENFAD-----RVLQATTQISPAQVQGYFM 401          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: YR776_MIMIV (Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R776 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   55 TVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL-SVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-----LLCCCGDEKITIF 456
            +VL D+D F R ++ YR++G  ++RG LLYG  G GK+ LI+ ++N    D Y LNL S   SDS L  L  +V  RSILV+E+ID  I+  N    K            V++ GLL+A+DG      + C  D +  IF
Sbjct:  178 SVLKDVDVFMRNEDTYRELGANYRRGMLLYGESGCGKTGLISIISNKYGMDSYILNLNSKDMSDSVLISLASNVKARSILVIEEIDKQIETLNANGNK-----------NVSIGGLLSALDGPQGLAHVLCYNDSQCDIF 306          
The following BLAST results are available for this feature:
BLAST of FC932272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
BCS1B_DICDI1.417e-2833.62Probable mitochondrial chaperone BCS1-B OS=Dictyos... [more]
BCS1_YEAST3.157e-2839.88Mitochondrial chaperone BCS1 OS=Saccharomyces cere... [more]
BCS1_SCHPO5.954e-2734.20Probable mitochondrial chaperone bcs1 OS=Schizosac... [more]
BCS1A_DICDI5.954e-2733.64Probable mitochondrial chaperone BCS1-A OS=Dictyos... [more]
BCS1_XENLA1.915e-2533.33Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=... [more]
BCS1_DANRE7.279e-2533.49Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs... [more]
BCS1_MOUSE3.612e-2433.49Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bc... [more]
BCS1_HUMAN6.162e-2433.48Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BC... [more]
BCS1_BOVIN1.051e-2333.63Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1... [more]
YR776_MIMIV1.376e-1539.29Uncharacterized protein R776 OS=Acanthamoeba polyp... [more]

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Properties
Property NameValue
Genbank descriptionC34206G04EF PostHarveN Citrus clementina cDNA clone C34206G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932272 ID=FC932272; Name=FC932272; organism=Citrus clementina; type=EST; length=672bp
CTCGACCATCCGATGACCTTTGGTACGTTGGTTATGGACGGCGACTTGAA
AGAGACTGTGCTGAACGATCTTGATTGTTTCAGAAGAGGGAAGGAGTATT
ACAGGAAGATCGGTAAAGTTTGGAAGAGAGGTTACTTGTTGTACGGGCCA
CCGGGAACCGGCAAGTCCAGTTTGATTGCTGCTATGGCTAATTATATGAA
TTATGATATTTACAACTTGAACTTATCGGTTGTCACTTCCGATTCTTCAC
TTGAGTACTTGCTGCTCCATGTGCCTAACCGTTCAATTCTTGTTGTCGAG
GATATCGACTGTTCTATCAAACTACAGAATCGCGAGTCTCAGAAGGGGGA
TGAACCAGCTGATTCCTATCGGGGACCTCAGGTGACTCTTGCTGGACTAC
TGAATGCCATTGATGGTCTGCTCTGCTGCTGTGGAGACGAAAAGATCACT
ATCTTCACTACTAACTACAAAGATAGAATCGACCCTGCATTACTGCGAGC
AGGGCGTATGGACAGGCACATAAACCTCTCCTATTGTACATTCTCCACCT
TCAAGCAGCTGGCAGCCAACTACTTGGATATTAATGATCATGATCTTTAT
TGTCACATTGAAAAACTTATGGAAAAGGTCAAAGTTTCCCCTGCTGAGGT
TGCCGGTGAACTCATGAAGGCC
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