FC932273

Overview
NameFC932273
Unique NameFC932273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14547 contig Ccv1_Contig14547:7..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_THEMA (Anthranilate synthase component II OS=Thermotoga maritima GN=trpGD PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 64/126 (50.79%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            +IVIDNYDSF YN+ QY+GE+      EV+RNDE+T+EE++RKNP  ++ISPGPG P+++GIS+  V      VP+ GVC+G Q IG AFGGKIV +   ++HGK+S + ++ K   G+ +G+ NP
Sbjct:   47 VIVIDNYDSFVYNIVQYIGEVEPDCEIEVFRNDEITIEEIERKNPTHIVISPGPGRPEEAGISVDVVRHFSGKVPILGVCLGHQVIGYAFGGKIVHAK-RILHGKTSKIVHNGK---GVFSGVKNP 168          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PSEPU (Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 59/124 (47.58%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            +++IDNYDSFTYN+ QY+GELG   +V RNDE+T+ +++  NP  +++SPGP TP ++G+S++ +L     +P+ GVC+G Q IG+AFGG +VR+   VMHGK+S V++ +    G+  GL NP
Sbjct:    3 LMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAGVSIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRA-RQVMHGKTSPVHHRDL---GVFTGLNNP 122          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_CYAPA (Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 62/124 (50.00%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFTYNL QY+ EL     V RND++T++E+K  N +G++ISP PG P+DSGIS   +  LG  +P+ GVC+G Q IG  FGGKI+++P  ++HGK S++++D K   G+   L NP
Sbjct:    2 ILLIDNYDSFTYNLAQYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGISQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKAP-KLIHGKPSIIFHDGK---GVFQNLKNP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PORPU (Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.833e-29
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFTYNL Q +GELG+   V RNDE+ V ++K+ NP  ++ISPGPG P +SGISL  +  L   +P+ GVC+G Q IG   GG I++ P  +MHGK+S +Y+D    + L   L NP
Sbjct:    2 ILIIDNYDSFTYNLAQCVGELGHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGKPTESGISLDVISSLAEYIPILGVCLGHQSIGYINGGSIIKVP-KIMHGKTSQIYHD---REDLFINLPNP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PSEAE (Anthranilate synthase component II OS=Pseudomonas aeruginosa GN=trpG PE=4 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            +++IDNYDSFTYNL QY GEL    +V RNDEL+VE+++   P  +++SPGP TP ++G+SL  +      +PL GVC+G Q IG+AFGG++VR+   VMHGK+S +++ +    G+ AGL NP
Sbjct:    2 LLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAGVSLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRA-RQVMHGKTSPIHHKDL---GVFAGLANP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PORYE (Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFTYNL Q +GELGY   V RNDE+ +  +K+ NP  ++ISPGPG P DSGISL  +     ++P+ GVC+G Q IG   GG+I++    +MHGK+S +Y++    + L   L NP
Sbjct:    2 ILIIDNYDSFTYNLAQCVGELGYDVLVCRNDEIDIPTIKQLNPNKIIISPGPGKPSDSGISLDVISSFSDSIPILGVCLGHQSIGYLNGGRIIKVS-EIMHGKTSKIYHN---NEDLFKTLPNP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_THET8 (Anthranilate synthase component II OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpG PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            ++V+DNYDSFTYNL QY+GELG    V+RND   +EE++  +P  +LISPGP TP ++G+S+  V    P  P+ GVC+G Q IG AFGGK+V +P+ +MHGK S +++D     G+  GL +P
Sbjct:   14 VLVVDNYDSFTYNLVQYLGELGAEPIVWRNDRFRLEEVEALDPDRILISPGPCTPFEAGLSVPLVQRYAPRYPILGVCLGHQAIGAAFGGKVVPAPV-LMHGKVSPIHHD---GTGVFRGLDSP 133          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: PABA_BACSU (Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis GN=pabA PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFTYNL QY+GELG    V RND +T++E++  +P  ++ISPGP +P ++GISL+ +      +P+FGVC+G Q I + FGG +VR+   +MHGK+S + +D K    +  GL NP
Sbjct:    2 ILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAE-RLMHGKTSDIEHDGK---TIFEGLKNP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_ACIAD (Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 53/113 (46.90%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +++IDNYDSFTYN+ QY GEL    +V RND++T+E+++R  P+ +++ PGP +P ++GIS+  +      +PL GVC+G Q IG+AFGG I+R+   VMHG+ S +Y+ +KG
Sbjct:    2 LLMIDNYDSFTYNIVQYFGELNQDVKVVRNDQVTLEDIERWQPKYLVVGPGPCSPTEAGISIPAIHHFAGRIPLLGVCLGHQAIGQAFGGNIIRAKT-VMHGRLSDMYHTDKG 113          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PICAN (Anthranilate synthase component 2 (Fragment) OS=Pichia angusta PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +++IDNYDSFT+NL +Y+ + G + EV+RND++T+ E+++  P  V+ISPGPG P+ DSGIS   +      +P+FGVCMG QCI E FGG +  +   ++HGK+S V +D KG
Sbjct:    8 VVMIDNYDSFTWNLYEYLCQEGANVEVFRNDQITIPEIEQLKPDVVVISPGPGHPRTDSGISRDVISHFKGKIPVFGVCMGQQCIFEEFGGDVEYAG-EIVHGKTSTVKHDNKG 120          
The following BLAST results are available for this feature:
BLAST of FC932273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TRPG_THEMA2.746e-3050.79Anthranilate synthase component II OS=Thermotoga m... [more]
TRPG_PSEPU1.780e-2947.58Anthranilate synthase component II OS=Pseudomonas ... [more]
TRPG_CYAPA1.780e-2950.00Anthranilate synthase component II OS=Cyanophora p... [more]
TRPG_PORPU8.833e-2950.00Anthranilate synthase component II OS=Porphyra pur... [more]
TRPG_PSEAE2.570e-2849.19Anthranilate synthase component II OS=Pseudomonas ... [more]
TRPG_PORYE5.725e-2848.39Anthranilate synthase component II OS=Porphyra yez... [more]
TRPG_THET87.477e-2849.19Anthranilate synthase component II OS=Thermus ther... [more]
PABA_BACSU1.666e-2747.58Para-aminobenzoate/anthranilate synthase glutamine... [more]
TRPG_ACIAD1.080e-2646.90Anthranilate synthase component 2 OS=Acinetobacter... [more]
TRPG_PICAN5.925e-2548.25Anthranilate synthase component 2 (Fragment) OS=Pi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206G05EF PostHarveN Citrus clementina cDNA clone C34206G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932273 ID=FC932273; Name=FC932273; organism=Citrus clementina; type=EST; length=694bp
GGCTCAGTTTTTTGTTGTCTTTGAAGTTAAAAAGCGCCTTAGTTTCATAT
TCTCAGTCTCGCTCTCTCCTCTCTAGCAACAATGGCGGCAATGGTTTCGC
AGTCAACTCTCATTCAAACAAAACCGTCTCTCTCTTTAAAACCCTCTCAA
CGGTTTCGACCCAATCGTCTCTCTGCAATCCCTGAGCCTTCTCCAGGGCT
GAGGTTGGGGGCTAAGAAGGGAAATGGGGCTGTAAAGTTGTCAATGGCTG
TGGCAGAGGCAGTACCCATTTCGAAGTCTTTATATTTGGATGATAAGAAG
AGCAAGAATAATAAAAATCCCATCATTGTTATTGATAATTATGATAGTTT
CACTTACAATCTCTGCCAGTATATGGGCGAGCTTGGTTATCACTTTGAGG
TTTATCGGAATGATGAATTAACTGTGGAGGAGTTAAAACGGAAAAATCCT
AGAGGAGTGCTTATATCCCCTGGGCCGGGCACACCTCAAGATTCTGGAAT
ATCATTGCAGACTGTTTTGGAACTTGGACCTACTGTGCCTCTGTTTGGTG
TTTGTATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTG
CGTTCTCCGCTTGGTGTCATGCATGGAAAAAGTTCTCTTGTGTATTATGA
TGAGAAAGGGGAGGATGGCTTGCTTGCTGGACTATNCAATCCTT
back to top