FC932276

Overview
NameFC932276
Unique NameFC932276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15416 contig Ccv1_Contig15416:28..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 82/198 (41.41%), Postives = 127/198 (64.14%), Query Frame = 1
Query:   91 KTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            K  IG+IG+GVMG +MAS +L+ G+ V VY RT  KA  +  +GA    +  D++K + V+ +MVG P DV  +    +GI+     GA  +D T+S P+LA++I + A+EK  +A+DAPVSGGDIGA++G LAI   G+    +   P+F ++G+   + G AG GQ  K+ NQI + A ++G++E + +A K+GL+
Sbjct:    2 KKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLE 199          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.025e-32
Identity = 78/197 (39.59%), Postives = 111/197 (56.35%), Query Frame = 1
Query:   97 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQ-LQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            ++ +IG+GVMG  MA  L+  G+ VTVY RT +KA Q ++  G   A +P D A+   +VF+ VG   D+R + L   GIV G++ GA+ VD T++   +AREI       +   +DAPVSGG  GA +G L +   GD A    + P+     +    +G  G GQ  K+ NQI +   + GL+EGL FA  AGLD
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLD 199          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 70/196 (35.71%), Postives = 109/196 (55.61%), Query Frame = 1
Query:   97 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            ++G+IG+G+MG  M+  LL AGYS+ V  R       + + GA  A++   +A+   V+ +M+     V+ +AL  +GI+ G  PG V +D +S  P  +REI +  + K    +DAPVSGG+  A DG L++   GD A+      L + + G     GE G G   K+ANQ++V  N+  +SE L  A KAG++
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVN 197          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 70/196 (35.71%), Postives = 109/196 (55.61%), Query Frame = 1
Query:   97 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            ++G+IG+G+MG  M+  LL AGYS+ V  R       + + GA  A++   +A+   V+ +M+     V+ +AL  +GI+ G  PG V +D +S  P  +REI +  + K    +DAPVSGG+  A DG L++   GD A+      L + + G     GE G G   K+ANQ++V  N+  +SE L  A KAG++
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVN 197          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 1
Query:   97 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            ++G+IG+G+MG  MA  L  AG+ + V       A +L S GA    +   V ++S ++F MV     V  +    +G       G   VD +S  P   +   +   E     +DAPVSGG+IGAR+G L+I   GD AV + + PLFE+LGK  T +G  G GQ+CK+ANQI+V  N+  +SE L+FA KAG D
Sbjct:    2 KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGAD 196          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.061e-29
Identity = 71/209 (33.97%), Postives = 114/209 (54.55%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM--GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            ITP+  RIG++G+G+MG+ + S LL  G+ VTV+ RT+ K      +GA L  +P +V     + FS V  P+  R + L P G++ G+ PG  YV+ ++  P    E+ +V   +    ++APVSG    + DG L I AAGD +V +  +  F+ +GK +F   GEAG      +   +V G+ +  ++EGL  A   G   + ++D
Sbjct:  171 ITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLD 379          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 66/208 (31.73%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D
Sbjct:  262 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLD 469          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 66/208 (31.73%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLD 470          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 66/208 (31.73%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLD 470          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 65/208 (31.25%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            +TP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D
Sbjct:  263 VTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLD 470          
The following BLAST results are available for this feature:
BLAST of FC932276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
YKWC_BACSU1.745e-4041.41Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
Y1503_SHEFN1.025e-3239.59Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GARR_ECOLI2.138e-3035.712-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL62.138e-3035.712-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLXR_ECOLI4.763e-3039.292-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_DANRE1.061e-2933.97Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_RAT9.931e-2831.73Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_CHICK9.931e-2831.73Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_HUMAN1.297e-2731.73Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_BOVIN1.297e-2731.25Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]

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Properties
Property NameValue
Genbank descriptionC34206G08EF PostHarveN Citrus clementina cDNA clone C34206G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932276 ID=FC932276; Name=FC932276; organism=Citrus clementina; type=EST; length=700bp
GATTTTTTCACTCCCCAAAGTCCATCTTCTCTCTCACTCATCAACTCTGC
AAATATGGAAACTCCTTATCCAAAGCCCATTACTCCCAGCAAGACCCGCA
TCGGCTGGATCGGGATCGGCGTAATGGGCAACGCCATGGCTTCCCGCCTT
CTCTCCGCCGGCTACTCCGTCACCGTCTACGCTCGCACCTCATCAAAAGC
CCTTCAGCTCCAATCACAAGGCGCCACTCTCGCCGCTTCACCGTTCGACG
TCGCCAAATCAAGCGGCGTTGTCTTCTCCATGGTGGGCACCCCACAAGAC
GTTCGATCAATTGCCCTCGATCCCGACGGCATCGTTTCTGGCCTCAACCC
CGGCGCCGTCTACGTTGACACCACGAGCAGTCACCCTGCCCTCGCGCGGG
AAATATTCAAAGTCGCAAGAGAGAAAGATTGCTGGGCTGTTGACGCACCC
GTATCCGGAGGCGACATTGGCGCCCGAGATGGGAAATTAGCTATATTTGC
TGCTGGTGATAGTGCTGTTGTGCAGTGGCTGACTCCGTTGTTTGAGGTTC
TGGGGAAGCCTACGTTTATGGGCGAGGCGGGTTGTGGGCAAAGCTGTAAA
ATTGCGAATCAGATTGTGGTGGGAGCAAACTTGTTGGGACTGAGTGAAGG
TTTGGTGTTTGCTGATAAAGCGGGGTTGGATGTGAGAAAATGGATGGATG
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