FC932286

Overview
NameFC932286
Unique NameFC932286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14794 contig Ccv1_Contig14794:20..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.901e-58
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 401
            MA+SSFKLEHPLERRQAE+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.901e-58
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 401
            MA+SSFKLEHPLERRQAE+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.472e-57
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 401
            MA SSFKLEHPLERRQ ES+RIREKYPDRIPVIVE+AERSD+P+IDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIF+FVKN LPPTAAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 7.902e-56
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 401
            MAKSSFKL+H LERRQAE+ RIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.902e-56
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 401
            MAKSSFKL+H LERRQAE+ RIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.348e-55
Identity = 104/119 (87.39%), Postives = 116/119 (97.48%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 407
            MA++SFKLEHPLERRQAESARIREKY DRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIF+FVKN LPPTA++MSAIYEENKDEDGFLYMTYSGENTFG++
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA 119
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.348e-55
Identity = 104/119 (87.39%), Postives = 116/119 (97.48%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 407
            MA++SFKLEHPLERRQAESARIREKY DRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIF+FVKN LPPTA++MSAIYEENKDEDGFLYMTYSGENTFG++
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA 119
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.003e-55
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF 410
            MA SSFK EHPLE+RQAE+ARIREKYPDRIPVIVE+AE+SD+PDID+KKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKNILPPTAA+MSAIYEE+KDEDGFLYM+YSGENTFG  F
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIFF 120
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.261e-53
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 404
            MAKSSFK+ +PLE R +ES+RIREKYPDRIPVIVEKA +SD+PDIDKKKYLVPADLTVGQFVYVVRKRIKL AEKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118
[Close]
BLAST of FC932286 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.177e-53
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 3 
Query:   51 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF 410
            M K+SFKL +PLE R AES RIR KYP+R+PVIVEKA +SD+PDIDKKKYLVPADLT+GQFVYVVRKRIKL AEKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG SF
Sbjct:    1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120
The following BLAST results are available for this feature:
BLAST of FC932286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8C_ORYSJ2.901e-5895.73Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI2.901e-5895.73Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ARATH5.472e-5792.31Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ7.902e-5693.16Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI7.902e-5693.16Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ1.348e-5587.39Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI1.348e-5587.39Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8D_ARATH3.003e-5588.33Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8A_ARATH1.261e-5386.44Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8B_ARATH8.177e-5383.33Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC34207A02EF PostHarveN Citrus clementina cDNA clone C34207A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932286 ID=FC932286; Name=FC932286; organism=Citrus clementina; type=EST; length=671bp
GATATTCATTTTCCCCTTGGCAGAAGCAGTAGAAAGAACAAGGAGAAGCT
ATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGAGGCAGGC
TGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACCAGTGATTG
TGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAAAAAAATAC
CTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTGGTCCGGAA
GAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGTCAAGAACA
TTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGGAAAACAAA
GATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAACACATTCGG
GGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAACTCTGAAAA
GACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAACTGAGGGA
GCACTTGGAAAGCATGATCTTCCTGGACGCAGCCCCTTCTTAAAGTTTGG
ATCTATTGTTACTCCTCTTTATCTTATTTGTTGCAGTAAATATTCGTGAT
TTCATATTGGATGAGCAAGTTAATACAGGTACTGTTGGATTAACTGAAAA
AAAAAAAAAAAAAAAAAAAAA
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