FC932288

Overview
NameFC932288
Unique NameFC932288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10728 contig Ccv1_Contig10728:59..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932288 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.535e-37
Identity = 76/152 (50.00%), Postives = 104/152 (68.42%), Query Frame = 2 
Query:  107 HNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAFDLLAILEELQIDSCILVGHSVSAMIGAIASTSRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSNYKAWCSGFA 559
            ++VKV GSG+  I+ A GFG DQSVW  + P   +D+RV+L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +AS  RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  NY  W + FA
Sbjct:    9 NHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFA 160
The following BLAST results are available for this feature:
BLAST of FC932288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU3.535e-3750.00Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34207A04EF PostHarveN Citrus clementina cDNA clone C34207A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932288 ID=FC932288; Name=FC932288; organism=Citrus clementina; type=EST; length=653bp
GAAGACAAAAACGCTTTCACTAATCACTTGACAACACAAAAGAAAATAAA
AGAAAAGGAAGCTCCGCAGATTCAGGCGAGGCGAAATGGGAATCGTGGAA
GAAGCTCACAACGTGAAAGTGACGGGGTCAGGGGAGCAAGTGATAGTGTT
GGCTCACGGCTTCGGCACCGACCAGTCGGTGTGGAAGCACCTCGTGCCTC
ATCTCGTCGACGATTACCGCGTCGTTTTGTATGACAACATGGGCGCTGGC
ACCACCAATCCCGACTACTTTGACTTCAACAGATACTCCACCCTCGAAGG
CTATGCCTTCGATTTGCTTGCTATTTTAGAAGAGCTGCAAATTGACTCTT
GTATTCTCGTCGGTCACTCTGTTTCCGCCATGATTGGCGCCATCGCCTCC
ACCTCCCGCCCTGATCTCTTCACTAAACTCGTCATGATCTCCGGCTCTCC
TAGGTATCTCAATGATGTGGATTACTACGGAGGATTTGAGCAAGAGGAGC
TGGATCAGCTTTTTGAAGCAATGAGGTCAAATTACAAGGCATGGTGCTCT
GGATTCGCCCCGCTAGCTGTCGGCGGGGACATGGACTCGGTGGCTGTTCA
AGAATTTAGCCGAACCTTATTCAACATGAGACCAGACATAGCCTTGAGTG
TGG
back to top