FC932290

Overview
NameFC932290
Unique NameFC932290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932290 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:   19 QCEMELPLKSIAVTIVILTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEA 225
            + +M+   K+IA TI  L V+ WAWRVL+W W  PK++EK LRQQG +GN YR L GD+KE+    +EA
Sbjct:    2 EMDMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEA 69
The following BLAST results are available for this feature:
BLAST of FC932290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO1.636e-1352.17Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionC34207A06EF PostHarveN Citrus clementina cDNA clone C34207A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932290 ID=FC932290; Name=FC932290; organism=Citrus clementina; type=EST; length=665bp
GAAACTCGCAAAATCTGTCAGTGTGAAATGGAGTTGCCTCTGAAATCCAT
AGCTGTTACCATTGTTATTCTAACGGTGCTAACATGGGCATGGAGAGTGC
TGAACTGGGTGTGGCTGAGGCCCAAGAAGCTGGAGAAATTCCTGAGACAG
CAAGGTTTAAAAGGCAATTCTTACAGGCTTCTGTTTGGTGACCTGAAAGA
AAATTCCATCGAGCTGAAGGAAGCCAAAGCCTGATGAATCCCCTAATGAG
TTTGGTAAAAATCACTAGGCTAACGTGGATACTCATCTTGGCATATGATC
TAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCG
ATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAA
CGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAAC
TCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAA
AACATAACATCAAACGAATCGACCGATTGTGAGGTAATCGTCACCTCCAC
AAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGG
CAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAT
ACGACTTATGGTATT
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