FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15480 contig Ccv1_Contig15480:1..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB17I_ARATH (ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.573e-47
Identity = 95/153 (62.09%), Postives = 119/153 (77.78%), Query Frame = 1
Query:   31 MPSTCSLFRD-EVREHLLTVPGEAEAEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLLSL 486
            MPS  S   D  +REHL+ V             +PK RV +L + +DDG+ ILKGV ++IPKG+I+G+IGPSGSGKST LR+LNRLWEPP  TVFLDG DIT++DV++LRR+VGMLFQ+P LF+GTVADN+RYGP LRG+KL++ EVYKLLSL
Sbjct:    1 MPSLWSNESDGSLREHLVDVVVSGS--------EPKIRVHDLTRVADDGSRILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSL 145          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB1_THETN (Phosphate import ATP-binding protein pstB 1 OS=Thermoanaerobacter tengcongensis GN=pstB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            DG  ILK V  +  K  I  ++GPSG+GKST+L+ +NRL EP  G +F++G +  ++DV+ LRRK+GM+FQ P LFEGTV +NI  GP LRG+K
Sbjct:   13 DGKYILKNVYFKFEKNGIYTVVGPSGAGKSTMLKLINRLIEPTEGAIFINGVEYKNIDVILLRRKIGMVFQRPFLFEGTVKENIELGPSLRGEK 106          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PHNC2_SYNJB (Phosphonates import ATP-binding protein phnC 2 OS=Synechococcus sp. GN=phnC2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALFEG-TVADNIRYG 429
            R+  L K    G   LKGV +E+P G +M +IGPSG+GKSTLLR +NRL EP SG+++L+G D+T L+   L   RRK+GM+FQ  AL E  TV +N+  G
Sbjct:    3 RIDSLSKRYPTGDMALKGVTLEVPDGQVMALIGPSGAGKSTLLRCINRLVEPTSGSIWLNGIDLTRLNTRELRQARRKIGMIFQEYALVERLTVMENVLSG 103          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB2_THETN (Phosphate import ATP-binding protein pstB 2 OS=Thermoanaerobacter tengcongensis GN=pstB2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.590e-18
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--KKLTENEV 468
            LK +N+++    ++ +IGPSG GKST +R LNR+ +       SGTV LDG+DI  ++DV+ LR+KVGM+FQ P  F  TV DN+ YGP++ G   K T NE+
Sbjct:   19 LKKINLDVEPNSVLALIGPSGCGKSTFIRTLNRMNDLIEGVKISGTVLLDGKDIYKEVDVIELRKKVGMVFQKPNPFPMTVYDNVAYGPRIHGIRDKRTLNEI 121          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_METTH (Phosphate import ATP-binding protein pstB OS=Methanobacterium thermoautotrophicum GN=pstB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            D A ILK +N++IPK  +  +IGPSG GKST +R LNR+ +  S     G V+LDG+DI   D+DV+ LR+KVGM+FQ P  F  ++ +N+ YG ++ G
Sbjct:   17 DEAHILKDINLKIPKNTVTALIGPSGCGKSTFIRTLNRMNDVISGFRHEGHVYLDGKDIYDPDMDVVELRKKVGMVFQKPNPFPKSIFENVAYGLRVHG 115          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR1_CRIGR (Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 39/88 (44.32%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+N+E+ KG  + ++G SG GKST+++ L R ++P +GTVFLDG+++  L+V  LR  +G++ Q P LF+ ++A+NI YG   R
Sbjct: 1048 PVLQGLNLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGTVFLDGKEVNQLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSR 1135          

HSP 2 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            ILKG+N+++  G  + ++G SG GKST ++ L RL++P  G V +DG+DI  ++V  LR  +G++ Q P LF  T+A+NIRYG +     +T +E+ K
Sbjct:  406 ILKGLNLKVQSGQTVALVGNSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE----NVTMDEIEK 499          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB29B_ARATH (ABC transporter B family member 29 OS=Arabidopsis thaliana GN=ABCB29 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  157 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRY 426
            K  ++  P+L G+N+ I  G  + ++GPSG GK+TL++ L RL+EP SG++ +D  DI D+ + SLR+ VG++ Q   LF GT+ADNI Y
Sbjct:  404 KYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYEPSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGY 493          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.624e-17
Identity = 39/88 (44.32%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +GTVFLDG++I  L+V  LR  +G++ Q P LF+ ++A+NI YG   R
Sbjct: 1049 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGTVFLDGKEIKQLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSR 1136          

HSP 2 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  163 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            S  G  ILKG+N+++  G  + ++G SG GKST ++ L RL++P  G V +DG+DI  ++V  LR  +G++ Q P LF  T+A+NIRYG +     +T +E+ K
Sbjct:  402 SRSGIKILKGLNLKVQSGQTVALVGKSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE----NVTMDEIEK 501          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCBA_HUMAN (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.732e-17
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            PI +  ++ IP G +  ++GPSGSGKST+L  L RL++P SGT+ LDG DI  L+ + LR K+G + Q P LF  ++A+NI YG
Sbjct:  508 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYG 591          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR3_MOUSE (Multidrug resistance protein 3 OS=Mus musculus GN=Abcb1a PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 38/88 (43.18%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +G+VFLDG++I  L+V  LR ++G++ Q P LF+ ++A+NI YG   R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134          

HSP 2 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            ILKG+N+++  G  + ++G SG GKST ++ + RL++P  G V +DG+DI  ++V  LR  +G++ Q P LF  T+A+NIRYG
Sbjct:  405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB17I_ARATH2.573e-4762.09ABC transporter I family member 17 OS=Arabidopsis ... [more]
PSTB1_THETN9.845e-2353.19Phosphate import ATP-binding protein pstB 1 OS=The... [more]
PHNC2_SYNJB8.625e-1950.50Phosphonates import ATP-binding protein phnC 2 OS=... [more]
PSTB2_THETN5.590e-1847.57Phosphate import ATP-binding protein pstB 2 OS=The... [more]
PSTB_METTH9.536e-1847.47Phosphate import ATP-binding protein pstB OS=Metha... [more]
MDR1_CRIGR9.536e-1844.32Multidrug resistance protein 1 OS=Cricetulus grise... [more]
AB29B_ARATH2.124e-1745.56ABC transporter B family member 29 OS=Arabidopsis ... [more]
MDR2_CRIGR3.624e-1744.32Multidrug resistance protein 2 OS=Cricetulus grise... [more]
ABCBA_HUMAN4.732e-1748.81ATP-binding cassette sub-family B member 10, mitoc... [more]
MDR3_MOUSE6.181e-1743.18Multidrug resistance protein 3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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