FC932292

Overview
NameFC932292
Unique NameFC932292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15482 contig Ccv1_Contig15482:14..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 200.29 bits (508), Expect = 7.792e-51
Identity = 98/183 (53.55%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            AL + GL GLAVMG+NLALN+   GF ++VYNRT  K +  + DRA  +  +P    Y+  DFV S++RPR ++++VKAG PVD  +  L   + PGD IIDGGN  + +TERR+ +    GL ++GMGVSGGEEGA +GPSLMPGG+  AY  +  I++ +AAQVDDGPCVTYIG GGSG++
Sbjct:    2 ALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPA---YSLEDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQVDDGPCVTYIGPGGSGHY 181          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLTR (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia trachomatis GN=gnd PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.728e-48
Identity = 92/178 (51.69%), Postives = 131/178 (73.60%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            IGL GLAVMG+NL LN+ + GF +SVYNR+ +K +E L      G L   G  T ++FV S++RPR ++I++KAG+PVD+ IA+L   +  GD +IDGGN +YL++E+R  +  ++G+L++GMGVSGGEEGAR GPS+MPGG+ +A+  I  I Q +AAQVD  PC ++IG GG+G+F
Sbjct:    7 IGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFLKDHGESGALQ--GFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDGGNSYYLDSEQRYVDLKKEGILFVGMGVSGGEEGARKGPSIMPGGNIDAWPAIAPIFQSIAAQVDGRPCCSWIGTGGAGHF 182          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLMU (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia muridarum GN=gnd PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.064e-48
Identity = 93/178 (52.25%), Postives = 131/178 (73.60%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            IGL GLAVMG+NL LN+ + GF +SVYNR+  K +E L + H E  + L G     +FV S++RPR ++I++KAG+PVD+ I++L   +  GD +IDGGN +YL++ERR  +  ++G+L++GMGVSGGEEGAR GPS+MPGG+ EA+  I  I Q +AAQVD  PC ++IG GG+G+F
Sbjct:    6 IGLIGLAVMGKNLVLNMIDHGFAVSVYNRSPEKTEEFL-KEHGEN-ISLQGFTAIEEFVQSLKRPRKIMIMIKAGAPVDEMISSLLPFLEEGDILIDGGNSYYLDSERRYIDLKKKGILFVGMGVSGGEEGARKGPSIMPGGNIEAWPVIAPIFQSIAAQVDGQPCCSWIGTGGAGHF 181          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia pneumoniae GN=gnd PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.002e-47
Identity = 91/182 (50.00%), Postives = 130/182 (71.43%), Query Frame = 1
Query:  136 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA--HREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            + IGL GLAVMG+NL LN+ + GF +SVYNRT  K  + L     HRE    L G  +  DFV S++RPR ++++++AG PVDQ+I AL   + PGD IIDGGN ++ ++ERR  E  ++G+L+LG+G+SGGEEGARHGPS+MPGG+ EA+  +  I Q +AA+V   PC +++G GG+G++
Sbjct:    3 TNIGLIGLAVMGKNLVLNMIDHGFSVSVYNRTPEKTRDFLKEYPNHRE----LVGFESLEDFVNSLERPRKIMLMIQAGKPVDQSIHALLPFLEPGDVIIDGGNSYFKDSERRCKELQEKGILFLGVGISGGEEGARHGPSIMPGGNPEAWPLVAPIFQSIAAKVQGRPCCSWVGTGGAGHY 180          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 180.644 bits (457), Expect = 6.389e-45
Identity = 85/179 (47.49%), Postives = 127/179 (70.95%), Query Frame = 1
Query:  139 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            +IG+ GLAVMG+NLALN+  +GF +SVYNR++SK +E L  A  +    + G Y+  +FV S++ PR ++++VKAG+  D TI +L  H+   D +IDGGN +Y +T+RR  E ++ G+ ++G GVSGGEEGA  GPS+MPGG  EA+  ++ IL+ ++A+VD  PC TYIG  G+G++
Sbjct:    5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHY 180          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD2_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Saccharomyces cerevisiae GN=GND2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.090e-44
Identity = 89/182 (48.90%), Postives = 124/182 (68.13%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            A+  +GL GLAVMGQNL LN A+ GF +  YNRT SKVD  L  A+      + G  +  D V  +++PR +++L+KAG+PVD  I  L  H+  GD IIDGGN  + +T RR  E ++QG+L++G GVSGGE+GAR GPSLMPGGS EA+ +I++I Q +AA+ +  PC  ++G  GSG++
Sbjct:    4 AVGDLGLVGLAVMGQNLILNAADHGFTVVAYNRTQSKVDRFL--ANEAKGKSIIGATSIEDLVAKLKKPRKIMLLIKAGAPVDTLIKELVPHLDKGDIIIDGGNSHFPDTNRRYEELTKQGILFVGSGVSGGEDGARFGPSLMPGGSAEAWPHIKNIFQSIAAKSNGEPCCEWVGPAGSGHY 183          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEIN (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus influenzae GN=gnd PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.205e-43
Identity = 87/179 (48.60%), Postives = 123/179 (68.72%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            IG+ GLAVMGQNL LN+ + GF +  YNRTTSKVDE L  A +   +   G Y+  D    +++PR V+++V+AG  VDQ I AL  H+  GD IIDGGN  Y +T RR+   +++G+ ++G GVSGGEEGARHGPS+MPGG+ EA+  ++ I Q ++A+ + G PC  ++G  G+G+F
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGTNI--IGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIIDGGNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGNQEAWQYVKPIFQAISAKTEQGEPCCDWVGGEGAGHF 183          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CANAL (6-phosphogluconate dehydrogenase, decarboxylating OS=Candida albicans GN=DOR14 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 89/197 (45.18%), Postives = 136/197 (69.04%), Query Frame = 1
Query:   85 ILTISLFSSVSMEAPALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            IL+  L  + +  + A   IGL GLAVMGQNL LN+A+ G+ +  YNRTT+KVD  L+   +   +   G ++ ++ V  ++RPR +++LVKAG+PVD+ I  L  ++  GD IIDGGN  + ++ RR  E +++G+L++G GVSGGEEGAR GPSLMPGG+ +A+ +I++I Q VAA+ D  PC  ++G+ G+G++
Sbjct:   12 ILSKQLSFNNTNSSIARGDIGLIGLAVMGQNLILNMADHGYTVVAYNRTTAKVDRFLENEAKGKSI--LGAHSIKELVDQLKRPRRIMLLVKAGAPVDEFINQLLPYLEEGDIIIDGGNSHFPDSNRRYEELAKKGILFVGSGVSGGEEGARTGPSLMPGGNEKAWPHIKEIFQDVAAKSDGEPCCDWVGDAGAGHY 206          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 1
Query:  145 GLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDD---GPCVTYIGEGGSGNF 675
            G+ GLAVMG+NLALNV  +GFPI+V+NR+ +K ++ +  A R     +   YT  +FV  ++RPR ++++VKAG PVD  I  L   +  GD IIDGGN  Y +TERR  +    GL ++GMGVSGGEEGA  GPSLMPGG+  AY  +  IL K+AAQV+D     CVT+IG GG+G++
Sbjct:   14 GVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFM--AERAVGKDIKAAYTVEEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGFVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAGHY 191          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_AGGAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Aggregatibacter actinomycetemcomitans GN=gnd PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 86/179 (48.04%), Postives = 124/179 (69.27%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            IG+ GLAVMGQNL LN+ + GF +  YNRTTSKVDE L+ A +   +   G Y+  D    +++PR V+++V+AG  VD  I AL  H+  GD IIDGGN  Y +T RR+    ++G+ ++G GVSGGEEGARHGPS+MPGG+ EA+  ++ +LQ ++A+ + G PC  ++G+ G+G+F
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLEGAAKGTNI--IGAYSLEDLANKLEKPRKVMLMVRAGEVVDHFIDALLPHLEAGDIIIDGGNSNYPDTNRRVAALREKGIRFIGTGVSGGEEGARHGPSIMPGGNEEAWQFVKPVLQAISAKTEQGEPCCDWVGKDGAGHF 183          
The following BLAST results are available for this feature:
BLAST of FC932292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SYNE77.792e-5153.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLTR4.728e-4851.696-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLMU8.064e-4852.256-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLPN4.002e-4750.006-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU6.389e-4547.496-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_YEAST1.090e-4448.906-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEIN1.205e-4348.606-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CANAL2.055e-4345.186-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY32.684e-4350.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_AGGAC2.684e-4348.046-phosphogluconate dehydrogenase, decarboxylating ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207A08EF PostHarveN Citrus clementina cDNA clone C34207A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932292 ID=FC932292; Name=FC932292; organism=Citrus clementina; type=EST; length=677bp
GGAGTCCGTCGCGCTCTCACCAACCTCAATTTCCAGTATAAATTAATTTA
AAAAACAAATAAATATATATCTCCTCCGCCCCAAATACTCACCATTTCTC
TTTTTTCTTCAGTTTCAATGGAAGCCCCTGCTCTCTCACGCATCGGTCTT
GCTGGCCTAGCCGTCATGGGCCAGAACCTGGCCCTAAACGTCGCTGAAAA
AGGCTTCCCAATCTCCGTCTACAACCGCACTACTTCCAAAGTCGACGAAA
CCCTAGATCGGGCCCACCGCGAGGGTCAACTCCCTTTGACCGGCCACTAC
ACTCCCAGGGACTTCGTCCTCTCCATCCAACGCCCCAGATCCGTCATCAT
CTTAGTCAAAGCCGGCTCCCCCGTTGACCAGACCATCGCCGCCCTCTCGG
AGCACATGTCCCCCGGCGACTGCATCATCGACGGCGGCAACGAGTGGTAC
CTCAACACCGAGCGCCGTATCCATGAAGCCAGCCAGCAGGGTTTGCTTTA
TCTCGGCATGGGGGTCTCCGGCGGCGAGGAAGGCGCGCGTCATGGTCCCT
CTTTGATGCCCGGTGGCTCCTTTGAGGCTTATAATAATATTCGAGATATT
TTGCAAAAAGTTGCCGCCCAAGTTGATGATGGCCCTTGTGTTACTTACAT
TGGTGAAGGCGGGTCTGGTAATTTCGT
back to top