FC932295

Overview
NameFC932295
Unique NameFC932295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932295_ssr232 microsatellite FC932295_ssr232:232..252. BLAST: Citrus ESTs to Populus V2 proteins
FC932295_ssr75 microsatellite FC932295_ssr75:75..89. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:36..762. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.528e-68
Identity = 135/202 (66.83%), Postives = 149/202 (73.76%), Query Frame = 2
Query:  128 MAVLTKNTATRLPLLL-SQRAAC---LHTTVPXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            MA++T+NTATRLPL+L S RAA    LHT++P                               G+SKTAEFVISK+DD++N+ RRGSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG
Sbjct:    1 MAMITRNTATRLPLVLQSHRAAAVSHLHTSLPALSPATTPTSYTRPGPPSTSAPPP-------GLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 195          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.094e-67
Identity = 128/198 (64.65%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  128 MAVLTKNTATRLPLLLSQRAACLHTTVPXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            MA++T+NTATRLPLLL  + A    +V                                G+SK AEFVISK+DD++N+ R GSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG
Sbjct:    1 MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 198          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.463e-63
Identity = 121/181 (66.85%), Postives = 131/181 (72.38%), Query Frame = 2
Query:  179 QRAACLHTTVPXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            QRAA +HTT+P                               GISK AE+VISK+DD++N+ RRGSIWPM+FGLACCAVEMMH GAARYD DRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG
Sbjct:   19 QRAATIHTTLPSLSQQPAS------SPATSGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYG 193          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.645e-58
Identity = 102/133 (76.69%), Postives = 116/133 (87.22%), Query Frame = 2
Query:  323 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            EF++SK+D++VN+ R+GS+WPM+FGLACCAVEMMH+ A+RYDLDRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 162          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_METFK (NADH-quinone oxidoreductase subunit B OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoB PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.391e-56
Identity = 102/132 (77.27%), Postives = 110/132 (83.33%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV + LD V+NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG
Sbjct:   11 FVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALLYG 142          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB2_ACIF5 (NADH-quinone oxidoreductase subunit B 2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 101/132 (76.52%), Postives = 111/132 (84.09%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEALL+G
Sbjct:   11 FVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIVPVDIYVPGCPPTAEALLFG 142          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 99/137 (72.26%), Postives = 114/137 (83.21%), Query Frame = 2
Query:  311 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYG
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYG 193          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 99/137 (72.26%), Postives = 114/137 (83.21%), Query Frame = 2
Query:  311 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYG
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYG 193          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 99/137 (72.26%), Postives = 114/137 (83.21%), Query Frame = 2
Query:  311 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYG
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYG 193          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 99/137 (72.26%), Postives = 114/137 (83.21%), Query Frame = 2
Query:  311 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYG
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYG 193          
The following BLAST results are available for this feature:
BLAST of FC932295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_BRAOL3.528e-6866.83NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH5.094e-6764.65NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_SOLTU4.463e-6366.85NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM5.645e-5876.69NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NUOB_METFK1.391e-5677.27NADH-quinone oxidoreductase subunit B OS=Methyloba... [more]
NUOB2_ACIF55.284e-5676.52NADH-quinone oxidoreductase subunit B 2 OS=Acidith... [more]
NDUS7_PONPY5.284e-5672.26NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR5.284e-5672.26NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN5.284e-5672.26NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO5.284e-5672.26NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207A11EF PostHarveN Citrus clementina cDNA clone C34207A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932295 ID=FC932295; Name=FC932295; organism=Citrus clementina; type=EST; length=723bp
GACTTTCAACCCCAACAACAATCAATTTCTCTCTCGCTTGCCCCCGTGTG
AGAAAACTAAACCAAACCCCACCCCCCCACCCCACCCCACAACCCCCAAA
ACACAAGCCCAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACAC
TGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACA
CGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTCCTCC
TCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCC
AGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATG
TCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTG
GCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTT
AGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCA
TGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAG
GTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTG
TGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTT
GCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACT
GCTGAGGCCCTACTCTATGGAAT
back to top