FC932297

Overview
NameFC932297
Unique NameFC932297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932297 vs. ExPASy Swiss-Prot
Match: ZNHI2_HUMAN (Zinc finger HIT domain-containing protein 2 OS=Homo sapiens GN=ZNHIT2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 2
Query:  170 CHVCQKQFSQYTCPRCNSRYCSLKCYQSHSRRCTESFMRDNVVEEMRRMQSDDETKRKMVDILKRFHXXXXXXXXXXXXXXXXXLSEETMQKILSGGEVNFDDLSADEKKRFLRAVASGELSRMIEPWDPWWLKPSARTISLSKQGTQLVQPLAWHDSSAPPEDDLE 670
            C   + Q ++YTCPRCN+ YCSL+CY++H   C E+F RD V+ E+R   +      ++   L+R                   LS       LSG    ++ L+  EK  F R ++ GE  R++ PW PWW    A        G QL++ L     +AP  D  E
Sbjct:   10 CPAGEVQPARYTCPRCNAPYCSLRCYRTHG-TCAENFYRDQVLGELRGCSAPPS---RLASALRRLR----QQRETEDEPGEAGLSSGPAPGGLSG---LWERLAPGEKAAFERLLSRGEAGRLLPPWRPWWWNRGA--------GPQLLEEL----DNAPGSDAAE 153          
BLAST of FC932297 vs. ExPASy Swiss-Prot
Match: ZNHI2_MOUSE (Zinc finger HIT domain-containing protein 2 OS=Mus musculus GN=Znhit2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = 2
Query:  194 SQYTCPRCNSRYCSLKCYQSHSRRCTESFMRDNVVEEMRRMQSDDETKRKMVDILKRFHXXXXXXXXXXXXXXXXXLSEETMQKILSGGEVNFDDLSADEKKRFLRAVASGELSRMIEPWDPWW 565
            ++YTCPRCN+ YCSL+CY++H   C E F RD V+ E+R   +      ++   L+R                   L        LSG    ++ L+  EK  F R ++ GE  R++ PW PWW
Sbjct:   18 ARYTCPRCNAPYCSLRCYRAHGA-CAEDFYRDQVLRELRGRSASPS---RLAGALRRLREQREAEDEPEEAG----LGPGARPGGLSG---LWERLTPAEKAAFERLLSRGEAGRLLPPWRPWW 130          
The following BLAST results are available for this feature:
BLAST of FC932297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZNHI2_HUMAN1.106e-1331.74Zinc finger HIT domain-containing protein 2 OS=Hom... [more]
ZNHI2_MOUSE3.557e-1233.06Zinc finger HIT domain-containing protein 2 OS=Mus... [more]
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Properties
Property NameValue
Genbank descriptionC34207B01EF PostHarveN Citrus clementina cDNA clone C34207B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932297 ID=FC932297; Name=FC932297; organism=Citrus clementina; type=EST; length=719bp
GGAATTGACTTTTTTAAATTGAAACCCTAATATCTGAAACATTTGAATTA
TAAATCCAAAATTAACCTCGGAAGCACTTTGTTTAGATTGATTGAAGATG
GCTGAGCCAATCCTAACCTCTGACAAACCTTCGAGTTCGTCCTCATTGAA
TCCTCCTTCTCGAATAATCTGCCACGTGTGTCAGAAGCAATTTTCGCAGT
ATACTTGCCCTCGATGTAATTCGCGATATTGTTCCCTTAAGTGCTATCAG
TCTCATAGTCGACGTTGTACTGAATCCTTCATGAGAGATAATGTGGTTGA
AGAGATGCGGCGGATGCAATCTGATGATGAAACTAAAAGGAAAATGGTGG
ATATTTTGAAGCGATTCCATTCAGAAGAGGAAATGGATAGCATGGATGAA
GATGGTTCAACAGAATCAACACTATCTGAGGAGACAATGCAAAAGATTTT
GTCTGGTGGTGAAGTCAATTTTGATGATTTATCTGCAGATGAGAAGAAGC
GGTTTTTAAGAGCCGTGGCATCTGGAGAACTGAGCAGAATGATTGAGCCA
TGGGATCCTTGGTGGCTGAAGCCTTCTGCGAGAACGATTTCTCTCAGCAA
GCAAGGAACTCAACTTGTCCAACCTCTTGCTTGGCATGATTCATCAGCAC
CACCTGAAGATGATCTAGAAAGTAACCAATCAGTGAAATTCACCTGGTCC
TGAGGCCCACTACCTCCAT
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