FC932300

Overview
NameFC932300
Unique NameFC932300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12229 contig Ccv1_Contig12229:211..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.731e-78
Identity = 145/210 (69.05%), Postives = 171/210 (81.43%), Query Frame = 3
Query:   63 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATSR 692
            KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L  K++  DALIVRSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCL                        RNVAQADAS+K GKW+R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VI+HDPYAPADRARA+GVDLVSFD+A++TADF+SLHMPLTPAT +
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKK 291          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.284e-43
Identity = 91/206 (44.17%), Postives = 127/206 (61.65%), Query Frame = 3
Query:   72 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAVATADFISLHMPLTPAT 686
            +L+ + L +  + +L E   V+ A  L+ EEL  KI   D L+VRSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +                        RN+ QA AS+K G+W R ++ G+ L GKTL V+G G++G +V +RAK  GM++I +DPY P + A ++GV+LV   +E    ADFI+LH+PLTP T
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGVELVDDINELCKRADFITLHVPLTPKT 208          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 82/209 (39.23%), Postives = 124/209 (59.33%), Query Frame = 3
Query:   60 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPAT 686
            S+  VLIA+ + + G+  L E A V     ++PEEL   I   DA++VRS TKV R+V E+ A RLK++ RAGVG+DNVD+ AAT+ G +                        R +A AD SVK GKW++N+++G+ L GKTL ++G G++GS+V  R K  GM ++ +DPY   + A  +GV +   +  +  +D +++H+PLTP T
Sbjct:    2 SRMKVLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPET 209          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 83/206 (40.29%), Postives = 126/206 (61.17%), Query Frame = 3
Query:   72 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPAT 686
            VL+AE + +  +D + +    V+    +S EEL  ++   +A++VRS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +                        R + QAD SVK GKW+R K++G+ L GKT  V+G G+VG EVA+R K L M+V+A+DP+   +RA  IGV LV FD  +A++D I++H+P T  T
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIGVKLVDFDTLLASSDVITVHVPRTKET 207          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 78/206 (37.86%), Postives = 121/206 (58.74%), Query Frame = 3
Query:   72 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATS 689
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +  KTL V+G GK+GS VA  AK +GM ++A+DP+   +RA  IG  LV  D   + ADFI+LH+P TP T+
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETA 236          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 83/208 (39.90%), Postives = 120/208 (57.69%), Query Frame = 3
Query:   66 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATS 689
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS++   W+R+ + G  + GKT+ V+G G++G  VA R    G HVIA+DPY    RA  +G++L+SFD+ +A ADFIS+H+P TP T+
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSFDDLLARADFISVHLPKTPETA 210          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 79/210 (37.62%), Postives = 119/210 (56.67%), Query Frame = 3
Query:   60 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATS 689
            S P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DPY    RA  +G++L+S D+ +A ADFIS+H+P TP T+
Sbjct:    2 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETA 210          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 79/210 (37.62%), Postives = 119/210 (56.67%), Query Frame = 3
Query:   60 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATS 689
            S P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DPY    RA  +G++L+S D+ +A ADFIS+H+P TP T+
Sbjct:    2 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETA 210          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 78/181 (43.09%), Postives = 105/181 (58.01%), Query Frame = 3
Query:  147 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATS 689
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R + LGM  I +DP    + + + GV  +  +E     DFI++H PL P+T+
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTT 214          
BLAST of FC932300 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 77/181 (42.54%), Postives = 103/181 (56.91%), Query Frame = 3
Query:  147 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKTGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAVATADFISLHMPLTPATS 689
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +DP    + A + GV  +  +E     DFI++H PL P+T+
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTT 214          
The following BLAST results are available for this feature:
BLAST of FC932300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
SERA_ARATH3.731e-7869.05D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA2.284e-4344.17D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH4.458e-3939.23D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_ARCFU6.438e-3840.29D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_SYNY32.071e-3637.86D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_MYCLE4.614e-3639.90D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCTU7.366e-3437.62D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO7.366e-3437.62D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_PONAB9.620e-3443.09D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_RAT1.641e-3342.54D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC34207B04EF PostHarveN Citrus clementina cDNA clone C34207B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932300 ID=FC932300; Name=FC932300; organism=Citrus clementina; type=EST; length=719bp
AACCCAAGCGGGCCCCGCCGCGGCTCGTAATAATCGCATCCGCCGCCGAC
GGCATCTCCTCAAAACCGACCGTTTTGATCGCCGAGAAGCTCGGACAGGC
CGGCTTGGATCTTCTCAACGAGTTCGCCAACGTGGACTGCGCATACAACT
TGTCGCCAGAGGAGCTCTGCACGAAGATCTCGCTCTGCGACGCGCTGATC
GTGCGCAGCGGCACGAAGGTCAATCGCGACGTGTTCGAGTCGTCAGCTGG
AAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTGGTATTGATAATGTGGATC
TGGCTGCGGCTACTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGACGGCG
AATACCGTTGCGGCTGCTGAGCATGGGATCGCGCTTTTGGCTGCCATGGC
TAGAAATGTCGCCCAGGCTGATGCCTCTGTTAAGACTGGAAAGTGGCAAA
GGAACAAATATGTGGGTGTCTCCCTTGTGGGTAAAACACTTGCTGTATTG
GGATTCGGAAAGGTTGGATCAGAAGTTGCTCGTCGTGCCAAGGGTCTGGG
TATGCATGTCATTGCACATGATCCGTATGCACCAGCTGATCGTGCTCGTG
CTATCGGTGTGGACCTTGTGAGCTTTGATGAAGCAGTAGCGACTGCAGAT
TTCATCTCTTTGCATATGCCTCTTACGCCTGCTACTTCAAGGTGCTCAAT
GATGAACTTTTGGAAAATG
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