FC932301

Overview
NameFC932301
Unique NameFC932301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15482 contig Ccv1_Contig15482:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 195.282 bits (495), Expect = 2.731e-49
Identity = 97/181 (53.59%), Postives = 127/181 (70.17%), Query Frame = 2
Query:  143 ALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETL-DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            AL + GL GLAVMG+NLALN+   GF ++V NRT  K +  + DRA  +  +P    Y+  DFV S++RPR ++++VKAG PVD  +  L   + PGD IIDGGN  + +TERR+ +    GL ++GMGVSGGEEGA +GPSLMPGG+  AY  +  I++ +AAQVDDGPCVTYIG GGSG
Sbjct:    2 ALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPA---YSLEDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQVDDGPCVTYIGPGGSG 179          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLTR (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia trachomatis GN=gnd PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.690e-46
Identity = 90/176 (51.14%), Postives = 128/176 (72.73%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            IGL GLAVMG+NL LN+ + GF +SV NR+ +K +E L      G L   G  T ++FV S++RPR ++I++KAG+PVD+ IA+L   +  GD +IDGGN +YL++E+R  +  ++G+L++GMGVSGGEEGAR GPS+MPGG+ +A+  I  I Q +AAQVD  PC ++IG GG+G
Sbjct:    7 IGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFLKDHGESGALQ--GFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDGGNSYYLDSEQRYVDLKKEGILFVGMGVSGGEEGARKGPSIMPGGNIDAWPAIAPIFQSIAAQVDGRPCCSWIGTGGAG 180          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLMU (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia muridarum GN=gnd PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.295e-46
Identity = 91/176 (51.70%), Postives = 128/176 (72.73%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            IGL GLAVMG+NL LN+ + GF +SV NR+  K +E L + H E  + L G     +FV S++RPR ++I++KAG+PVD+ I++L   +  GD +IDGGN +YL++ERR  +  ++G+L++GMGVSGGEEGAR GPS+MPGG+ EA+  I  I Q +AAQVD  PC ++IG GG+G
Sbjct:    6 IGLIGLAVMGKNLVLNMIDHGFAVSVYNRSPEKTEEFL-KEHGEN-ISLQGFTAIEEFVQSLKRPRKIMIMIKAGAPVDEMISSLLPFLEEGDILIDGGNSYYLDSERRYIDLKKKGILFVGMGVSGGEEGARKGPSIMPGGNIEAWPVIAPIFQSIAAQVDGQPCCSWIGTGGAG 179          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia pneumoniae GN=gnd PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 90/180 (50.00%), Postives = 127/180 (70.56%), Query Frame = 2
Query:  149 SRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRA--HREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            + IGL GLAVMG+NL LN+ + GF +SV NRT  K  + L     HRE    L G  +  DFV S++RPR ++++++AG PVDQ+I AL   + PGD IIDGGN ++ ++ERR  E  ++G+L+LG+G+SGGEEGARHGPS+MPGG+ EA+  +  I Q +AA+V   PC +++G GG+G
Sbjct:    3 TNIGLIGLAVMGKNLVLNMIDHGFSVSVYNRTPEKTRDFLKEYPNHRE----LVGFESLEDFVNSLERPRKIMLMIQAGKPVDQSIHALLPFLEPGDVIIDGGNSYFKDSERRCKELQEKGILFLGVGISGGEEGARHGPSIMPGGNPEAWPLVAPIFQSIAAKVQGRPCCSWVGTGGAG 178          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 2.239e-43
Identity = 84/177 (47.46%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            +IG+ GLAVMG+NLALN+  +GF +SV NR++SK +E L  A  +    + G Y+  +FV S++ PR ++++VKAG+  D TI +L  H+   D +IDGGN +Y +T+RR  E ++ G+ ++G GVSGGEEGA  GPS+MPGG  EA+  ++ IL+ ++A+VD  PC TYIG  G+G
Sbjct:    5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAG 178          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD2_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Saccharomyces cerevisiae GN=GND2 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 88/180 (48.89%), Postives = 121/180 (67.22%), Query Frame = 2
Query:  143 ALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            A+  +GL GLAVMGQNL LN A+ GF +   NRT SKVD  L  A+      + G  +  D V  +++PR +++L+KAG+PVD  I  L  H+  GD IIDGGN  + +T RR  E ++QG+L++G GVSGGE+GAR GPSLMPGGS EA+ +I++I Q +AA+ +  PC  ++G  GSG
Sbjct:    4 AVGDLGLVGLAVMGQNLILNAADHGFTVVAYNRTQSKVDRFL--ANEAKGKSIIGATSIEDLVAKLKKPRKIMLLIKAGAPVDTLIKELVPHLDKGDIIIDGGNSHFPDTNRRYEELTKQGILFVGSGVSGGEDGARFGPSLMPGGSAEAWPHIKNIFQSIAAKSNGEPCCEWVGPAGSG 181          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 91/178 (51.12%), Postives = 119/178 (66.85%), Query Frame = 2
Query:  158 GLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDD---GPCVTYIGEGGSG 682
            G+ GLAVMG+NLALNV  +GFPI+V NR+ +K ++ +  A R     +   YT  +FV  ++RPR ++++VKAG PVD  I  L   +  GD IIDGGN  Y +TERR  +    GL ++GMGVSGGEEGA  GPSLMPGG+  AY  +  IL K+AAQV+D     CVT+IG GG+G
Sbjct:   14 GVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFM--AERAVGKDIKAAYTVEEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGFVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAG 189          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_CANAL (6-phosphogluconate dehydrogenase, decarboxylating OS=Candida albicans GN=DOR14 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 88/195 (45.13%), Postives = 133/195 (68.21%), Query Frame = 2
Query:   98 ILTISLFSSVSMEAPALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            IL+  L  + +  + A   IGL GLAVMGQNL LN+A+ G+ +   NRTT+KVD  L+   +   +   G ++ ++ V  ++RPR +++LVKAG+PVD+ I  L  ++  GD IIDGGN  + ++ RR  E +++G+L++G GVSGGEEGAR GPSLMPGG+ +A+ +I++I Q VAA+ D  PC  ++G+ G+G
Sbjct:   12 ILSKQLSFNNTNSSIARGDIGLIGLAVMGQNLILNMADHGYTVVAYNRTTAKVDRFLENEAKGKSI--LGAHSIKELVDQLKRPRRIMLLVKAGAPVDEFINQLLPYLEEGDIIIDGGNSHFPDSNRRYEELAKKGILFVGSGVSGGEEGARTGPSLMPGGNEKAWPHIKEIFQDVAAKSDGEPCCDWVGDAGAG 204          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEIN (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus influenzae GN=gnd PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 85/177 (48.02%), Postives = 120/177 (67.80%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            IG+ GLAVMGQNL LN+ + GF +   NRTTSKVDE L  A +   +   G Y+  D    +++PR V+++V+AG  VDQ I AL  H+  GD IIDGGN  Y +T RR+   +++G+ ++G GVSGGEEGARHGPS+MPGG+ EA+  ++ I Q ++A+ + G PC  ++G  G+G
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGTNI--IGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIIDGGNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGNQEAWQYVKPIFQAISAKTEQGEPCCDWVGGEGAG 181          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD9_ECOLX (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli GN=gnd PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 86/178 (48.31%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ G+AVMG+NLALN+  +G+ +SV NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAGS  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL+++AA  +DG PCVTYIG  G+G
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVQEFVESLETPRRILLMVKAGSGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAG 179          
The following BLAST results are available for this feature:
BLAST of FC932301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SYNE72.731e-4953.596-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLTR3.690e-4651.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLMU6.295e-4651.706-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLPN1.402e-4550.006-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU2.239e-4347.466-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_YEAST3.819e-4348.896-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY33.233e-4251.126-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CANAL7.202e-4245.136-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEIN9.407e-4248.026-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD9_ECOLX1.605e-4148.316-phosphogluconate dehydrogenase, decarboxylating ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207B05EF PostHarveN Citrus clementina cDNA clone C34207B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932301 ID=FC932301; Name=FC932301; organism=Citrus clementina; type=EST; length=706bp
TTCGCTCCCTCGACGAGTCCGTCGCGCTCTCACCAACCTCAATTTCCAGT
ATAAATTAATTTAAAAAACAAATAAATATATATCTCCTCCGCCCCAAATA
CTCACCATTTCTCTTTTTTCTTCAGTTTCAATGGAAGCCCCTGCTCTCTC
ACGCATCGGTCTTGCTGGCCTAGCCGTCATGGGCCAGAACCTGGCCCTAA
ACGTCGCTGAAAAAGGCTTCCCAATCTCCGTCTGCAACCGCACTACTTCC
AAAGTCGACGAAACCCTAGATCGGGCCCACCGCGAGGGTCAACTCCCTTT
GACCGGCCACTACACTCCCAGGGACTTCGTCCTCTCCATCCAACGCCCCA
GATCCGTCATCATCTTAGTCAAAGCCGGCTCTCCCGTTGACCAGACCATC
GCCGCCCTCTCGGAGCACATGTCCCCCGGCGACTGCATCATCGACGGCGG
CAACGAGTGGTACCTCAACACCGAGCGCCGTATCCATGAAGCCAGCCAGC
AGGGTTTGCTTTATCTCGGCATGGGGGTCTCCGGCGGCGAGGAAGGCGCG
CGTCATGGTCCCTCTTTGATGCCCGGTGGCTCCTTCGAGGCTTATAATAA
TATTCGAGATATTTTGCAAAAAGTTGCCGCCCAAGTTGATGATGGCCCTT
GTGTTACTTACATTGGTGAAGGCGGGTCTGGTATTTCGTTAAGATGGTCA
TACGGA
back to top