FC932302

Overview
NameFC932302
Unique NameFC932302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LYS12_SCHPO (Probable homoisocitrate dehydrogenase OS=Schizosaccharomyces pombe GN=lys12 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.863e-68
Identity = 138/216 (63.89%), Postives = 168/216 (77.78%), Query Frame = 1
Query:   34 MAAARTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKPIDLVIVRENTEDLYVKEERTIEGPNGK-VAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETARRA 678
            M+A R + +GLIP DGIG+EV+PA RR++E+LP+   LKF F+DLDAG+ TF++TG ALP++TV+ LK EC+ ALFGAV SP+ KVAGYSSPIVALRKK+ LYANVRPVK+  G   GKP+DLVIVRENTE LYVKEER ++   GK VAEAI+RISE AS +I  +A EIA  RQKIR  S   S   + +VTI HKSNV+S TDGLFRE+ R A
Sbjct:    1 MSATRRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDG-AKGKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRE-SGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHA 214          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LYS12_YEAST (Homoisocitrate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LYS12 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 133/214 (62.15%), Postives = 168/214 (78.50%), Query Frame = 1
Query:   37 AAARTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKPIDLVIVRENTEDLYVKEERT-IEGPNG-KVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672
            AA ++L IGLIPGDGIG+EVIPAG+++LE+L S   L F+F+DL AG++TFQ+TG ALPD+TV  LK++C GALFGAV SP+TKV GYSSPIVALR+++ L+ANVRPVK+  G   GKPID+VIVRENTEDLY+K E+T I+   G +VA+A KRISE A+ RI+ IA +IAL+R           TR QA +T+THKSNVLSQ+DGLFRE  +
Sbjct:   19 AARKSLTIGLIPGDGIGKEVIPAGKQVLENLNSKHGLSFNFIDLYAGFQTFQETGKALPDETVKVLKEQCQGALFGAVQSPTTKVEGYSSPIVALRREMGLFANVRPVKSVEGE-KGKPIDMVIVRENTEDLYIKIEKTYIDKATGTRVADATKRISEIATRRIATIALDIALKR---------LQTRGQATLTVTHKSNVLSQSDGLFREICK 222          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_METJA (3-isopropylmalate/3-methylmalate dehydrogenase OS=Methanocaldococcus jannaschii GN=leuB PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 85/204 (41.67%), Postives = 115/204 (56.37%), Query Frame = 1
Query:   55 RIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP-IDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            +I +I GDGIG+EV+PA  ++LE+      L F FV  +AG E +++TG ALP++T++T   +CD  LFGA    +  V      IV LR  LD YAN+RPVK   G    +P ID VIVRENTE LY   E  I+     +  A + I+E A  RI   A  +A  R+K+           +  VT  HK+NVL  TDGLF++
Sbjct:    3 KICVIEGDGIGKEVVPATIQVLEAT----GLPFEFVYAEAGDEVYKRTGKALPEETIET-ALDCDAVLFGAAGETAADV------IVKLRHILDTYANIRPVKAYKGVKCLRPDIDYVIVRENTEGLYKGIEAEID---EGITIATRVITEKACERIFRFAFNLARERKKMGK---------EGKVTCAHKANVLKLTDGLFKK 183          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_METTH (3-isopropylmalate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=leuB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 85/207 (41.06%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   46 RTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP-IDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            ++++I +IPGDGIG EV+ A   IL    ++L+L   F+  DAG    ++TGTALP++T++ +  E    LFGA    +  V      IV LR++ DL+AN+RPVK+  G     P +D VIVRENTEDLYV +E     P G VA+ I  I+  AS RIS  A + A +                  VT  HK+NVL +TDG+FR+
Sbjct:    2 KSMKIAVIPGDGIGVEVMEAALHIL----NTLDLDLEFIHADAGDACLKRTGTALPEETLEAV-GEARATLFGAAGESAADV------IVRLRREFDLFANLRPVKSLPGVPCLYPDLDFVIVRENTEDLYVGDEEYT--PEGAVAKRI--ITRTASRRISQFAFQYAQK-------------EGMQKVTAVHKANVLKKTDGIFRD 180          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: AKSF_METJA (Homoisocitrate dehydrogenase OS=Methanocaldococcus jannaschii GN=aksF PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 85/216 (39.35%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   52 LRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPST-KVAGYSSPIVALRKKLDLYANVRPVKTTAGNT-----------NGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            +++ +I GDGIG+EVIP   +IL  L      +F  +  +AG E  +K G ALP+ T++  K E D  LFGA++SP   +V  Y SPI+ LRK   LYANVRP+                  N K ID+VI+RENTEDLYV  ER         A A + I+   S RI   A E A++  + +             V+  HK+NVL  TDGLF E
Sbjct:    2 MKVCVIEGDGIGKEVIPEAIKILNELG-----EFEIIKGEAGLECLKKYGNALPEDTIEKAK-EADIILFGAITSPKPGEVKNYKSPIITLRKMFHLYANVRPINNFGIGQLIGKIADYEFLNAKNIDIVIIRENTEDLYVGRERL----ENDTAIAERVITRKGSERIIRFAFEYAIKNNRKK-------------VSCIHKANVLRITDGLFLE 194          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_ARCFU (3-isopropylmalate dehydrogenase OS=Archaeoglobus fulgidus GN=leuB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.350e-26
Identity = 85/207 (41.06%), Postives = 114/207 (55.07%), Query Frame = 1
Query:   55 RIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP-IDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672
            +I +IPGDGIG+EV+ A   ILE L    +L F +   DAG E  +K G ALPD+T++  +K  D  LFGA    +  V      IV LR++L  +ANVRP K   G     P +D+V+VRENTE LY+      E   G V EAI+ I+  AS RI+  A E+A R  + +             VT  HK+NV+ +T GLFR+  R
Sbjct:    3 KIVVIPGDGIGKEVMEAAMLILEKL----DLPFEYSYYDAGDEALEKYGKALPDETLEACRKS-DAVLFGAAGETAADV------IVRLRRELGTFANVRPAKAIEGIECLYPGLDIVVVRENTECLYM----GFEFGFGDVTEAIRVITREASERIARYAFELAKREGRKK-------------VTALHKANVMKKTCGLFRDVCR 181          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_SULSO (3-isopropylmalate dehydrogenase OS=Sulfolobus solfataricus GN=leuB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 81/209 (38.76%), Postives = 108/209 (51.67%), Query Frame = 1
Query:   49 TLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP-IDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672
            T R+ +IPGDGIG E+    +RI+  L    NL    ++++AG     K G ALP  T+D ++K  D  L G V   +  V      +V LR+  D+YAN+RP K+     +  P +DLVIVRENTEDLY   E      +  V  AIK  +E AS RI N+A   AL R++               VT  HK+NV+  TDGLF    R
Sbjct:    2 TFRVAVIPGDGIGPELYEGSKRIIAKLIEKYNLDIDLIEVEAGDVALNKYGEALPRHTLDVIEK-ADMILKGPVGETAMDV------VVKLRQMYDMYANIRPAKSLPNVQSKYPNVDLVIVRENTEDLYKGFEFV---TSTGVTIAIKVTTEFASKRIVNVALNYALMRRR--------------KVTCVHKANVMRVTDGLFASVCR 186          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_SULTO (3-isopropylmalate dehydrogenase OS=Sulfolobus tokodaii GN=leuB PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 74/206 (35.92%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672
            + LI GDGIG E++   +RIL  +    +L   +++++AG     + G ALP  ++  + K  D  L G V   +  V      +V LR+  D+YAN+RP K+  G +T    +D++IVRENTEDLY   E  +   +  VA  +K I+  AS RI+ +    ALRR+K               VT  HK+NV+  TDGLF E  R
Sbjct:    5 VALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDK-ADIILKGPVGESAADV------VVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIV---SDGVAVGMKIITRFASERIAKVGLNFALRRRK--------------KVTCVHKANVMRITDGLFAEACR 186          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_ARCFU (Isocitrate dehydrogenase [NADP] OS=Archaeoglobus fulgidus GN=icd PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 73/212 (34.43%), Postives = 111/212 (52.36%), Query Frame = 1
Query:   73 GDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG----NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIK-----------RISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            GDGIG++V+PA  R+L++    +  +  +  + AG + ++  G  LPD T++ + KE   AL G +++P     GY S  V +R+ LDLYANVRPV    G      + + ++ VI RENTED+Y      IE P G   EA+K            I E +   I  I+ E A +R  +R A       ++  VT+ HK N++  T+G FR+
Sbjct:   35 GDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAI-KEFRVALKGPLTTPVG--GGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYA----GIEWPRGS-EEALKLIRFLKNEFGVTIREDSGIGIKPIS-EFATKR-LVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRD 236          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 75/227 (33.04%), Postives = 123/227 (54.19%), Query Frame = 1
Query:   13 LFKRSIKMAAA-RTLRIG------LIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTEDLYVK-EERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRET 666
            +FK  ++ ++A + L+ G      LIPGDGIGRE   A   I ++  +++ ++F  +D+    +  + +G AL +  + +LK+   G L G + +P  K  G++S  VALRK+LD+YA++  +K   G  T    +D  I+RENTE  Y   E +++ G    V E++K I+E+ S RI+  A + AL+  +               VT  HK+N++   DGLFR T
Sbjct:    1 MFKSLVRKSSAFQPLKYGGKYTVTLIPGDGIGRETSNAVTEIFKT--ANVPIEFEEIDVTGMEKNNKSSGDALHE-AIQSLKRNKVG-LKGILFTPFEK-GGHTSFNVALRKELDIYASLVLIKNIPGFKTRHDNVDFAIIRENTEGEYSGLEHQSVPG----VVESLKIITEYKSKRIAQFAFDFALQNGR-------------KSVTCIHKANIMKLADGLFRRT 205          
The following BLAST results are available for this feature:
BLAST of FC932302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
LYS12_SCHPO1.863e-6863.89Probable homoisocitrate dehydrogenase OS=Schizosac... [more]
LYS12_YEAST9.566e-6562.15Homoisocitrate dehydrogenase, mitochondrial OS=Sac... [more]
LEU3_METJA9.352e-2841.673-isopropylmalate/3-methylmalate dehydrogenase OS=... [more]
LEU3_METTH1.221e-2741.063-isopropylmalate dehydrogenase OS=Methanobacteriu... [more]
AKSF_METJA1.595e-2739.35Homoisocitrate dehydrogenase OS=Methanocaldococcus... [more]
LEU3_ARCFU1.350e-2641.063-isopropylmalate dehydrogenase OS=Archaeoglobus f... [more]
LEU3_SULSO1.143e-2538.763-isopropylmalate dehydrogenase OS=Sulfolobus solf... [more]
LEU3_SULTO1.397e-2335.923-isopropylmalate dehydrogenase OS=Sulfolobus toko... [more]
IDH_ARCFU2.088e-1934.43Isocitrate dehydrogenase [NADP] OS=Archaeoglobus f... [more]
IDH1_SCHPO8.773e-1833.04Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionC34207B06EF PostHarveN Citrus clementina cDNA clone C34207B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932302 ID=FC932302; Name=FC932302; organism=Citrus clementina; type=EST; length=680bp
GGGAAGAAAGAACTCTTCAAAAGGTCTATCAAAATGGCTGCTGCCCGGAC
ACTTCGCATTGGTCTCATCCCCGGAGACGGTATCGGACGGGAGGTCATCC
CGGCTGGCCGTCGGATCCTTGAATCTCTCCCCTCTTCCCTCAACCTCAAG
TTCAGCTTCGTCGACCTCGATGCTGGCTACGAGACCTTCCAGAAGACTGG
TACCGCTCTGCCCGACAAGACTGTCGATACCCTGAAGAAGGAGTGTGACG
GTGCTCTCTTTGGCGCTGTCAGCTCCCCTAGCACCAAGGTCGCCGGCTAC
TCCTCGCCCATTGTCGCTCTCCGCAAGAAGCTTGACTTGTACGCCAACGT
CCGCCCGGTCAAGACCACCGCCGGCAACACCAATGGCAAGCCCATTGACC
TTGTCATCGTCCGCGAGAACACCGAGGACCTGTACGTGAAGGAAGAGCGC
ACCATCGAGGGCCCCAACGGAAAGGTTGCCGAGGCCATCAAGCGCATCTC
TGAGCATGCCTCTTTCCGCATCTCCAACATCGCTGGTGAGATTGCGCTCC
GCCGCCAGAAAATCCGTTCCGCTTCCCCCGCCACCTCTACCCGTGACCAG
GCCATGGTTACCATCACCCACAAGTCGAACGTGCTCTCCCAGACTGACGG
TCTCTTCCGTGAGACCGCGCGCCGGGCTCT
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