FC932305

Overview
NameFC932305
Unique NameFC932305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932305_ssr64 microsatellite FC932305_ssr64:64..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC932305 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 2.010e-54
Identity = 112/215 (52.09%), Postives = 138/215 (64.19%), Query Frame = 2 
Query:   86 PLKIIAGADSFGAELKDALVSHLRSL-------------NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENLSCFLDKSMIEMPLIGKNDKLDN-----DSSGSTCSICCLVKNRELNPVEMIPGGSMKIVRESPTSAIVRFRPG 676
            PLKII GAD FGA LKDA+V+HLRSL             +                             A+FANK PGV+AATCL+  DA+NARSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   +S FLD S+ EM  IGK+   D+     D + ++C ICCL KNRE  PV+++PGGSMKIVRE+PTSAIVRF+ G
Sbjct:   11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEVRGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAG 225

HSP 2 Score: 23.8682 bits (50), Expect = 2.010e-54
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:  670 AGSVEPAHH 696
            AGSVEPAHH
Sbjct:  224 AGSVEPAHH 232
The following BLAST results are available for this feature:
BLAST of FC932305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR102_ARATH2.010e-5452.09DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34207B09EF PostHarveN Citrus clementina cDNA clone C34207B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932305 ID=FC932305; Name=FC932305; organism=Citrus clementina; type=EST; length=707bp
GACTGACTCTCCACTGAACTCATCCCTCGGAATAGTCAACTCGTAGTGAA
CCATGGCTGAAAACGCCGCCGCCGCCGCTCCCAGCCCTCTCAAGATCATC
GCAGGCGCCGACTCCTTCGGCGCCGAATTGAAAGACGCTCTGGTCTCCCA
CCTCCGGTCACTCAACATAGACGTCGGCCGCCGCGTCTCCTCCTCCGATT
CCTCCGACATCACCACACGCGGCGTCGTCGCCTGTGGAACCGGAGTGGGC
GTCGCAATCTTCGCCAACAAAAACCCCGGCGTCTTCGCCGCCACGTGTCT
CACCCCCGCTGACGCCCTGAACGCCCGCTCCATCAACAACTGCAACGTCC
TCGCTGTCTCAGGTATGTCCACTTCCAAAGAATCCGCCGTCGAAATCCTG
GACACGTGGCTTAAAACCCCTTTTAAGGCCCCATGCCCCGCGTCGGGTTT
TAAGCCATGGGAAGAGAACTTGTCGTGTTTTCTCGACAAGTCAATGATCG
AAATGCCCCTGATTGGTAAAAATGATAAATTAGATAATGATTCTAGTGGC
AGTACTTGTAGCATATGTTGTTTAGTTAAGAACAGGGAATTGAATCCTGT
GGAAATGATTCCGGGTGGATCAATGAAGATTGTTAGGGAGAGTCCAACGT
CGGCCATTGTGAGATTTAGGCCGGGAGTGTGGAGCCTGCGCATCACATAC
ATTTGGG
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