FC932308

Overview
NameFC932308
Unique NameFC932308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932308_ssr81 microsatellite FC932308_ssr81:81..95. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932308_ssr5 microsatellite FC932308_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11532 contig Ccv1_Contig11532:138..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 2
Query:  116 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAM 733
            +K FV GG+A +++   THP+D +KVRMQLQGE   V                                    P+ G + + V I QTEG   L+ G+SA++LRQ  Y+TTR GLYD++K     KD   +  ++K                PAD+ MVRMQADG+LP   RRNYK+V D I ++ ++EG+ SLW+G S  + RAM
Sbjct:   25 LKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEGTGVG-----------------------------------PKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIKDI-VAKDDKPLPFTQKIMVGMLSGAGGAIVGTPADLTMVRMQADGKLPFNLRRNYKNVFDGIFRISKEEGIISLWKGCSPNLIRAM 194          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 70/203 (34.48%), Postives = 102/203 (50.25%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAM 733
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I +TEG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP  QRR YK+V +A+ ++ R+EGV +LWRG   T+ RA+
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKTEGLKGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAV 192          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: M2OM_HUMAN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 69/203 (33.99%), Postives = 101/203 (49.75%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAM 733
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP  QRR YK+V +A+ ++ R+EGV +LWRG   T+ RA+
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAV 192          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.567e-23
Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAM 733
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+                              + I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP  QRR YK+V +A+ +++++EGV +LWRG   T+ RA+
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHAL-----------------------------ISILRAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPVDQRRGYKNVFNALFRIVQEEGVPTLWRGCIPTMARAV 192          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: M2OM_RAT (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Rattus norvegicus GN=Slc25a11 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.355e-22
Identity = 68/203 (33.50%), Postives = 100/203 (49.26%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAM 733
            F+ GG+A + A     PLDL+  RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP  QRR YK+V +A+ ++ R+EGV +LWRG   T+ RA+
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVXNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGPPAEVALIRMTADGRLPADQRRGYKNVFNALIRIAREEGVPTLWRGCIPTMARAV 192          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: M2OM_NEUCR (Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa GN=NCU10732 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.943e-22
Identity = 66/206 (32.04%), Postives = 101/206 (49.03%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNR---MTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAM 733
            F+ GG++ +VA     P+D+IKVR+QL GE  A                                     P+  P+ V   I  +     L++G+SA +LRQ +Y+T R+G +D    + + +   +   +    +               NPAD+A++RMQ+DG  P A+R+NYKSVIDA+  + R EGVA+LW G++ TV RAM
Sbjct:   45 FINGGLSGMVATTVIQPIDMIKVRIQLAGEGKAGG-----------------------------------PKPTPLGVTRDIIASGKAMDLYTGLSAGLLRQAVYTTARIGCFDTFMSRLSARAKEKGQSVGFKERASAGLAAGGLAAMIGNPADLALIRMQSDGLKPVAERKNYKSVIDALGGIARNEGVAALWAGAAPTVVRAM 215          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: DIC_MOUSE (Mitochondrial dicarboxylate carrier OS=Mus musculus GN=Slc25a10 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 55/198 (27.78%), Postives = 90/198 (45.45%), Query Frame = 2
Query:  134 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G  AL++G+SA++ RQ  YS TR  +Y+ ++   T      +    K                PAD+  VRMQ D +LPP+QRRNY   +D + ++ R+E +  L+ G+++  +R
Sbjct:   12 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALQVVRTDGFLALYNGLSASLCRQMTYSLTRFAIYETMRDYMTKDSQGPLPFYNKVLLGGISGLTGGFVGTPADLVNVRMQNDMKLPPSQRRNYSHALDGLYRVAREESLRKLFSGATMASSR 169          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: DIC_HUMAN (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 55/198 (27.78%), Postives = 90/198 (45.45%), Query Frame = 2
Query:  134 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G+ AL+SG+SA++ RQ  YS TR  +Y+ ++ +        +    K                PAD+  VRMQ D +LP  QRRNY   +D + ++ R+EG+  L+ G+++  +R
Sbjct:   13 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRNYAHALDGLYRVAREEGLRRLFSGATMASSR 170          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 66/204 (32.35%), Postives = 92/204 (45.10%), Query Frame = 2
Query:  119 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRA 730
            K F+ GG+ASI A C T P+DL K R+Q+QG+                  +N A               E+  R G +   V+I++ EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D   +  TL                  NP DV  +RMQA G L          +I     + +QEG   LW+G SLT  RA
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ------------------ANDAKY------------KEIRYR-GMLHAIVRIWKEEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDE-TLVINVFCGVLSGVVSSCIANPTDVLKIRMQAQGSLIQG------GMIGNFINIYQQEGTRGLWKGVSLTAQRA 172          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: KMCP1_XENLA (Kidney mitochondrial carrier protein 1 OS=Xenopus laevis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 64/204 (31.37%), Postives = 94/204 (46.08%), Query Frame = 2
Query:  119 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRA 730
            K F+ GG+ASI A C T P+DL K R+Q+QG+                         P+++ +      E+  R G +   V+I++ EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D   +  TL                  NP DV  +RMQA G +          +I     + +QEG   LW+G SLT  RA
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ-------------------------PNDAKY-----KEIRYR-GMMHAIVRIWREEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDE-TLVLNAFCGVLSGVVSSCIANPTDVLKIRMQAQGNVMQG------GMIVNFINIYQQEGTRGLWKGVSLTAQRA 172          
The following BLAST results are available for this feature:
BLAST of FC932308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
M2OM_DICDI1.145e-2937.86Probable mitochondrial 2-oxoglutarate/malate carri... [more]
M2OM_MOUSE3.226e-2434.48Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_HUMAN1.601e-2333.99Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_BOVIN3.567e-2333.50Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_RAT1.355e-2233.50Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_NEUCR3.943e-2232.04Putative mitochondrial 2-oxoglutarate/malate carri... [more]
DIC_MOUSE9.091e-1927.78Mitochondrial dicarboxylate carrier OS=Mus musculu... [more]
DIC_HUMAN1.187e-1827.78Mitochondrial dicarboxylate carrier OS=Homo sapien... [more]
KMCP1_XENTR3.819e-1732.35Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_XENLA8.509e-1731.37Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC34207B12EF PostHarveN Citrus clementina cDNA clone C34207B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932308 ID=FC932308; Name=FC932308; organism=Citrus clementina; type=EST; length=734bp
GATCAGCAAGCAAGCATTACTATTACATTACACGCTTGACACTCTTCACT
TCGTTTCCTGATCCTCCAATTTTTTTTTTAATTATTATTATTATTGTTAT
TTTTAAATCATGGGTGTTAAAGGATTTGTTGAGGGCGGAATTGCTTCAAT
TGTAGCTGGTTGCTCTACACATCCTCTCGATCTAATTAAAGTTCGCATGC
AACTCCAAGGCGAAAACGTCGCCGTTCCCCAGCAAGTCCACTCTCTCCGT
CCGGCTCTGGCTTTTCATTCCAACTCAGCCACTGTCTTTCCCTCTAATTC
CATCCATATCCCCACCACCGCACCAGAGCTGCCGCCACGTGTCGGTCCTA
TCTCCGTCGGAGTCAAGATCTTTCAAACCGAAGGCGTCGCCGCTTTGTTC
TCTGGCGTTTCCGCCACCGTGCTGAGACAAACATTGTACTCCACCACTCG
CATGGGGCTTTACGATGTGCTCAAACAAAAGTGGACTGACAAAGACTCCA
ACCGCATGACGTTGAGCCGCAAAGTAGCGGCCGGTTTGATCGCCGGAGCA
GTTGGGGCCACGGTTGGCAACCCCGCTGACGTGGCAATGGTCCGCATGCA
AGCCGACGGCCGCCTCCCACCGGCTCAGCGGCGTAACTACAAGAGCGTAA
TCGACGCGATCACGCAAATGTTGAGGCAAGAGGGGGTCGCCAGTCTCTGG
CGCGGATCATCGCTGACGGTGAACCGGGCGATGA
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