FC932310

Overview
NameFC932310
Unique NameFC932310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932310_ssr149 microsatellite FC932310_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14015 contig Ccv1_Contig14015:777..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932310 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 4.959e-91
Identity = 175/235 (74.47%), Postives = 188/235 (80.00%), Query Frame = 3 
Query:    6 EKCKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVIALXXXXXXXXXXXXXXXAKSSKDKKANGPDSGKAPSLVFKITSKIPYKTVLKAHNAVVLKAESTADKAEWINKISKVIQARGGLVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYISVSAQSTARIEELLQEDQNVKHRRDRYQK*SELLSKL 710
            +  KTNGWS+RWFVLNEKTGKLGYTKKQEER+FRG I L               +KSSKDKKANGPDS K P LVFKIT K+PYKTVLKAHNA+VLKAES  DK EWINK+ KVIQARGG V       +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLY S+SA    RIE L+QEDQNVK RR+RYQK S LLSKL
Sbjct:  582 KSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGTITLEECTIEEIPEDEVEKSKSSKDKKANGPDS-KGPGLVFKITCKVPYKTVLKAHNALVLKAESVVDKNEWINKLQKVIQARGGQV----GSVSMRQSLSEGSLDKMVRKPIDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRERYQKQSSLLSKL 811
[Close]
BLAST of FC932310 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.105e-90
Identity = 173/235 (73.62%), Postives = 189/235 (80.43%), Query Frame = 3 
Query:    6 EKCKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVIALXXXXXXXXXXXXXXXAKSSKDKKANGPDSGKAPSLVFKITSKIPYKTVLKAHNAVVLKAESTADKAEWINKISKVIQARGGLVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYISVSAQSTARIEELLQEDQNVKHRRDRYQK*SELLSKL 710
            +  KTNGWS+RWFVLNEKTGKLGYTKKQEER+FRG + L               +KSSKDKK+NGPDS K P LVFKIT ++PYKTVLKAHNA+VLKAES  DK EWINK+ KVIQARGG V  A    +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEK+KEDMLNQLY S+SA    RIE L+QEDQNVK RRDRYQK S LLSKL
Sbjct:  589 KSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGTVTLEECSIEEISDDEGEKSKSSKDKKSNGPDS-KGPGLVFKITCRVPYKTVLKAHNALVLKAESMVDKNEWINKLQKVIQARGGQVGSA----SMRQSLSEGSLDKMVRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRDRYQKQSSLLSKL 818
The following BLAST results are available for this feature:
BLAST of FC932310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRP2A_ARATH4.959e-9174.47Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
DRP2B_ARATH1.105e-9073.62Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC34207C02EF PostHarveN Citrus clementina cDNA clone C34207C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932310 ID=FC932310; Name=FC932310; organism=Citrus clementina; type=EST; length=710bp
CCGGGGAAAAGTGCAAAACTAATGGATGGAGCAAGCGATGGTTTGTTCTG
AATGAGAAGACTGGAAAGCTGGGCTACACCAAAAAGCAAGAGGAAAGGCA
TTTTCGTGGTGTCATTGCTTTGGAGGAATGTAATATTGAGGAGATTCCGG
AGGAGGAGGAACCTCCAGCAAAAAGTTCGAAGGATAAAAAGGCTAATGGA
CCCGATTCTGGGAAAGCACCAAGTCTTGTATTTAAGATTACTAGCAAAAT
TCCTTATAAAACTGTTCTGAAAGCCCACAATGCTGTTGTTTTGAAAGCTG
AGAGCACTGCTGATAAGGCGGAATGGATAAACAAGATAAGCAAAGTTATT
CAAGCTAGGGGAGGACTTGTTAGAGTTGCTGAAAGTGGTCATACGATGCG
TCAGAGTCTTTCTGATGGTTCTCTTGATACAATGGCTCGAAGACCTGCTG
ACCCTGAGGAAGAACTTCGATGGATGTCTCAAGAAGTACGTGGTTACGTT
GAAGCAGTTTTGAATAGTTTAGCTGCTAATGTGCCCAAAGCAGTTGTACT
TTGCCAAGTCGAGAAAGCGAAGGAAGACATGTTGAATCAGTTATATATCT
CCGTCAGTGCACAAAGCACGGCAAGGATTGAAGAGCTGCTTCAGGAGGAC
CAGAATGTGAAGCATAGGAGGGATCGCTATCAGAAATAGTCTGAACTCCT
GTCTAAACTA
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