FC932312

Overview
NameFC932312
Unique NameFC932312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15484 contig Ccv1_Contig15484:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  145 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 456
            T + VGD  GW++  +    YS WA+++TF VGD+LVFN+ AG H V  V +S + +C + + +S  +    ++ L  +G HYFIC  PGH  GG KL+I V A
Sbjct:   25 TVYTVGDTSGWVIGGD----YSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKVKA 124          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: UMEC_ARMRU (Umecyanin OS=Armoracia rusticana PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  157 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 450
            VG  + W   P+ P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +P+S  T  P  + L  +GP Y+IC+   HC  GQKL+INV
Sbjct:    5 VGGDMEW-KRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 101          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: BCB1_ARATH (Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  157 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 456
            VGD   W  P + P  Y+ WA  +TF VGD L F+FAAG HDV  V++++F  C    P+S  T  P  + L  +GP YFIC+   HC  GQKL+I V A
Sbjct:   27 VGDDTEWTRPMD-PEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITVVA 125          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: CPC_CUCSA (Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  145 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNAC---NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 456
            T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+AC   N+ + + RT  SP    L   G HYF+C+   HC  GQKL+INV A
Sbjct:    3 TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 107          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  145 TRHVVGDALGWIVPPNGPATYS-NWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR 459
            T + VGD+ GW VP  G   Y   WA+N+TF +GD LVF +    H+V +VTQ ++ +CN T+P++        + L   G  Y+IC  P HC  GQK+ INV+ R
Sbjct:    1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINVTVR 106          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  145 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 450
            T H VGD+ GW      P  Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN++SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V
Sbjct:    2 TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 101          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  154 VVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 450
            V G +  W +PP+   +++ WA    F VGD +VF + +G   V  VT+ ++N+CNTT+PL+  T+    V L  SGP YFI    GHC  GQKL++ V
Sbjct:   33 VGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV 131          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  157 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL-AINVSAR 459
            VG +  W+  P  P  Y +W+    F V DTL F++A G   V  V ++ ++ACNT +P+ R  +  + ++L   GP YFI     +C  GQKL  + +SAR
Sbjct:   33 VGGSGAWVTNP--PENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVISAR 132          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: BABL_LILLO (Chemocyanin OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = 1
Query:  151 HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 453
            + VGD  GW    +G      W A +TF  GD LVF +    H+V  V    + +C T SP SR   S       + G +YFICS PGHC GG K+A+  +
Sbjct:   33 YTVGDGGGWTFGTSG------WPAGKTFRAGDVLVFKYNPAVHNVVSVPAGGYKSC-TASPGSRVFKSGDDRITLSRGTNYFICSVPGHCQGGLKIAVTAA 126          
BLAST of FC932312 vs. ExPASy Swiss-Prot
Match: ENL3_ARATH (Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  154 VVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 450
            V G    W +P +   + + WA +  F VGDTLV+ +      V +VT+ ++  CNTT+P +  +N    V L  SGP++FI     +C+ G+KL I V
Sbjct:   28 VGGKTSSWKIPSSPSESLNKWAESLRFRVGDTLVWKYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNCVEGEKLHIVV 126          
The following BLAST results are available for this feature:
BLAST of FC932312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BCP_PEA4.580e-2042.31Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
UMEC_ARMRU3.877e-1945.92Umecyanin OS=Armoracia rusticana PE=1 SV=1[more]
BCB1_ARATH3.877e-1946.00Blue copper protein OS=Arabidopsis thaliana GN=BCB... [more]
CPC_CUCSA5.064e-1949.07Cucumber peeling cupredoxin OS=Cucumis sativus PE=... [more]
STEL_RHUVE3.282e-1841.51Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
MAVI_CUCPE1.629e-1742.16Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
ENL1_ARATH1.629e-1741.41Early nodulin-like protein 1 OS=Arabidopsis thalia... [more]
ENL2_ARATH5.423e-1336.27Early nodulin-like protein 2 OS=Arabidopsis thalia... [more]
BABL_LILLO9.250e-1338.61Chemocyanin OS=Lilium longiflorum PE=1 SV=1[more]
ENL3_ARATH3.515e-1235.35Early nodulin-like protein 3 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC34207C04EF PostHarveN Citrus clementina cDNA clone C34207C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932312 ID=FC932312; Name=FC932312; organism=Citrus clementina; type=EST; length=708bp
TGCAAAGAGAAAACAGGACACGAAAACAGAGAGAACAGAACAGGGGCGAC
CCCGGCCTTAAAGAACACAAACAAAACAATGTTTAACAGATTTTTTCTTG
CAGCGATTGCAATAGCAGCTCTAGTACAGAGCTCGACGGCACAGACAAGG
CATGTGGTGGGTGATGCACTAGGCTGGATTGTTCCTCCTAATGGTCCTGC
TACTTACTCTAACTGGGCTGCAAACCAGACCTTCACCGTCGGTGACACTC
TTGTGTTTAACTTTGCCGCAGGAAACCATGATGTTACTCGAGTAACACAA
TCATCATTCAATGCATGCAACACCACTAGTCCCCTATCCAGAACCACAAA
TAGCCCTGCGAGTGTTACTCTTACAGCTTCTGGGCCACACTACTTCATTT
GCTCATTTCCAGGCCACTGCCTCGGCGGTCAGAAATTAGCCATCAACGTT
AGCGCCAGGGGATCTTCTCCTACTCCTCAACCTTCTTCTCCGGCCCCTCA
GCCCAGCGGTAGTACTCCCTCTCCGGTTCCTGCACCAGCACGGACACCGA
CACCGGCACCAGCACCAGCACCAGAACCAGCAACAACACCTACGCCAGCA
CCAGCATCAGCACCAACACCAACACCGAGATCAGCACCAACACCAGCTCC
CACAGGCAGCCAGCGACTCATGTTGTTGGAGGTGCTCTAGGATGGACTGT
CCCTCCCA
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