FC932315

Overview
NameFC932315
Unique NameFC932315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932315_ssr76 microsatellite FC932315_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14015 contig Ccv1_Contig14015:850..1536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932315 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 9.690e-81
Identity = 160/217 (73.73%), Postives = 172/217 (79.26%), Query Frame = 2 
Query:    2 YTKKQEERHFRGVIALXXXXXXXXXXXXXXXAKSSKDKKANGPDSGKAPSLVFKITSKIPYKTVLKAHNAVVLKAESTADKAEWINKISKVIQARGGLVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSVSAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLPAHLA 652
            YTKKQEER+FRG I L               +KSSKDKKANGPDS K P LVFKIT K+PYKTVLKAHNA+VLKAES  DK EWINK+ KVIQARGG V       +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSS+SA    RIE L+QEDQNVKRRR+RYQKQS LLSKL   L+
Sbjct:  605 YTKKQEERNFRGTITLEECTIEEIPEDEVEKSKSSKDKKANGPDS-KGPGLVFKITCKVPYKTVLKAHNALVLKAESVVDKNEWINKLQKVIQARGGQV----GSVSMRQSLSEGSLDKMVRKPIDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRERYQKQSSLLSKLTRQLS 816
[Close]
BLAST of FC932315 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.159e-80
Identity = 158/217 (72.81%), Postives = 173/217 (79.72%), Query Frame = 2 
Query:    2 YTKKQEERHFRGVIALXXXXXXXXXXXXXXXAKSSKDKKANGPDSGKAPSLVFKITSKIPYKTVLKAHNAVVLKAESTADKAEWINKISKVIQARGGLVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSVSAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLPAHLA 652
            YTKKQEER+FRG + L               +KSSKDKK+NGPDS K P LVFKIT ++PYKTVLKAHNA+VLKAES  DK EWINK+ KVIQARGG V  A    +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEK+KEDMLNQLYSS+SA    RIE L+QEDQNVKRRRDRYQKQS LLSKL   L+
Sbjct:  612 YTKKQEERNFRGTVTLEECSIEEISDDEGEKSKSSKDKKSNGPDS-KGPGLVFKITCRVPYKTVLKAHNALVLKAESMVDKNEWINKLQKVIQARGGQVGSA----SMRQSLSEGSLDKMVRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRDRYQKQSSLLSKLTRQLS 823
The following BLAST results are available for this feature:
BLAST of FC932315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRP2A_ARATH9.690e-8173.73Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
DRP2B_ARATH2.159e-8072.81Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC34207C07EF PostHarveN Citrus clementina cDNA clone C34207C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932315 ID=FC932315; Name=FC932315; organism=Citrus clementina; type=EST; length=685bp
CTACACCAAAAAGCAAGAGGAAAGGCATTTTCGTGGTGTCATTGCTTTGG
AGGAATGTAATATTGAGGAGATTCCGGAGGAGGAGGAACCTCCAGCAAAA
AGTTCGAAGGATAAAAAGGCTAATGGACCTGATTCTGGGAAAGCACCAAG
TCTTGTATTTAAGATTACTAGCAAAATTCCTTATAAAACTGTTCTGAAAG
CCCACAATGCTGTTGTTTTGAAAGCTGAGAGCACCGCTGATAAGGCGGAA
TGGATAAACAAGATAAGCAAAGTTATTCAAGCTAGGGGAGGACTTGTTAG
AGTTGCTGAAAGTGGTCATACGATGCGTCAGAGTCTTTCTGATGGTTCTC
TTGATACAATGGCTCGAAGACCTGCTGACCCTGAGGAAGAACTTCGATGG
ATGTCTCAAGAAGTACGAGGTTACGTTGAAGCAGTTTTGAATAGTTTAGC
TGCTAATGTGCCCAAAGCAGTTGTACTTTGCCAAGTCGAGAAAGCGAAGG
AAGACATGTTGAATCAGTTATATAGCTCCGTCAGTGCACAAAGCACGGCA
AGGATTGAAGAGCTGCTTCAGGAGGACCAGAATGTGAAGCGTAGGAGGGA
TCGCTATCAGAAACAGTCTGAACTCCTGTCTAAACTACCCGCCCACTTAG
CATTCATGACACCGAGCGGCTGCTGCCTCTACTGG
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