FC932316

Overview
NameFC932316
Unique NameFC932316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932316 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2
Query:    5 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLK*AGKPPVFLKV 313
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSA +G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103          
BLAST of FC932316 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2
Query:    5 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLK*AGKPPVFLKV 313
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSA +G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103          
BLAST of FC932316 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 2
Query:    5 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLK*AGKPPVFLKV 313
            MSR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA+ G     +E  ++LY K+ + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101          
The following BLAST results are available for this feature:
BLAST of FC932316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ2.793e-2758.25Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI2.793e-2758.25Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH1.343e-2148.54Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34207C08EF PostHarveN Citrus clementina cDNA clone C34207C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932316 ID=FC932316; Name=FC932316; organism=Citrus clementina; type=EST; length=689bp
GAAGATGAGCCGGCATCCTACTGTGAAATGGGCCCAGAGGACTGATAGGG
TCTACATAACCATTGACCTGCCTGATGCTCAAGATGTGAAGCTTAAATTG
GAGCCTGAAGGAAAATTTTTCTTCTCTGCTATCAGTGGACCAGATAAGAT
ACCCTATGAAGTTGACATTGATTTGTACGACAAGGTTGATGTCAATGAGA
GCAAAGCTAGTGTTGGCTTGAGAAATATCCATTACCTTGTGAAAAAGGCA
GAAAACAAATGGTGGAGCAGGCTGCTAAAGTAGGCAGGAAAACCTCCTGT
ATTTCTGAAAGTTAGGGAGATGCAGGAAGCACTTGCTCGACGAAAAGAAG
CTGAAGAGAGAAAGAAAAGGGAAGAGGAGGAAAGGTTAAGGAAGGAAGAA
GAGGAGCGAAAGAGGCTAGAAGAACTTGAGAGACAAGCAGAAGAGGCTAA
GCGTCGAAAGAAGGAAAAAGAAAAGGAGAAGCTTTTGAAGAAGAAACAGG
AAGGCAAGCTTTTAACTGGCAAGCAGAAGGAAGAAGCACGTCGGTTGGAG
GCTATGAGGAACCAGTTTCTGGCTAAAGGTATTCCTCTTCCCACTGGTGA
CAAGGAAGCTGCATCAAAACGACCCAAATATCAGACAAAAAAGAAATCAG
CTCACCATCAGGCAAATGGTGCTGTGCCTCTTAGGAGCT
back to top