FC932328

Overview
NameFC932328
Unique NameFC932328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14566 contig Ccv1_Contig14566:322..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932328 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 6.150e-45
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2 
Query:    2 ELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMLESLTNPTKKDQIEERMAKIKEDPSLKPILDGIESGGPSAMMKYWNDKDVLQKLGEXMGL 400
            E+AEQIAKDPAFN +AEQLQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  L++ +NP   +   ERMA++KEDP LKPILD I++GGPSAMMKYWND +VL+KLGE MG+
Sbjct:   63 EMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLGEAMGM 195
The following BLAST results are available for this feature:
BLAST of FC932328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH6.150e-4563.16Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34207D09EF PostHarveN Citrus clementina cDNA clone C34207D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932328 ID=FC932328; Name=FC932328; organism=Citrus clementina; type=EST; length=404bp
GGAACTAGCTGAACAGATTGCGAAAGATCCAGCATTCAATTCCATGGCCG
AGCAACTTCAGAAAACTTTGCATGGTGCAAATGCTGAGGAGAGTATTCCA
CAGTTTGACACAACACAGTATTACTCCACCATGCAACAGGTTATGCAGAA
TCCTCAGTTTATGACTATGGCTGAGCGCCTTGGTAATGCTTTAATGCAGG
ACCCATCAATGTCTCATATGCTGGAGAGTTTGACAAACCCTACAAAAAAA
GACCAGATCGAGGAAAGAATGGCAAAAATCAAGGAAGATCCCTCTTTGAA
GCCTATTTTGGATGGGATAGAGTCTGGTGGACCATCTGCTATGATGAAGT
ACTGGAATGATAAAGATGTTTTGCAGAAATTGGGTGAAGNCATGGGTCTT
GCAG
back to top