FC932330

Overview
NameFC932330
Unique NameFC932330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14054 contig Ccv1_Contig14054:17..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.019e-63
Identity = 121/177 (68.36%), Postives = 146/177 (82.49%), Query Frame = 2
Query:  152 LWIPIL-LCLFNELSFAEAESSTILLPSQQHNADSVSTTFSAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYPGGWAKNGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVSEDRNILETFD 679
            +W+P++ L LF + S   A+++TILLPSQ         + S  C APDP+LNYRPVIGILSHPGDGASGRLSNAT+AS IAASYVK  ESGGARVIPLIFNEPEEILF+KLELVNG++  GGWAK GLY++IV+KIF K+LE+NDAG+HFP+YAICLGFELL MI+S++R+I E  D
Sbjct:    5 VWLPLVALSLFKD-SIIMAKAATILLPSQT----GFDISRSPVCSAPDPNLNYRPVIGILSHPGDGASGRLSNATDASSIAASYVKLAESGGARVIPLIFNEPEEILFQKLELVNGVILTGGWAKEGLYFEIVKKIFNKVLERNDAGEHFPIYAICLGFELLTMIISQNRDIFEKMD 176          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGH_SOYBN (Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.169e-52
Identity = 109/167 (65.27%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  176 LFNELSFAEAESSTILLPSQQHNADSVSTTFSAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYPGGWAKNGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVSEDRNILETF 676
            LF  L  A +    I LPSQ H+ DSVS      C A DPSLNY+PVIGIL+HPGDGASGRLSNAT  SYIAASYVKFVESGGARVIPLI+NE  E L +KL+LVNG+L+ GGWA +G Y D +  IFKK LE+NDAGDHFPV A  LG  L+  IVSE  +ILE F
Sbjct:   15 LFTCLLSATSHDDHIFLPSQLHDDDSVS------CTATDPSLNYKPVIGILTHPGDGASGRLSNATGVSYIAASYVKFVESGGARVIPLIYNESPENLNKKLDLVNGVLFTGGWAVSGPYLDTLGNIFKKALERNDAGDHFPVIAFNLGGNLVIRIVSEQTDILEPF 175          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGHA_DICDI (Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 47/130 (36.15%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  299 LNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYPGG---WAKNGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVSEDRNILETFD 679
            +N RP+IGIL+ P DG          + YIAASYVK++ES GARV+P++++   + L E +  +NG+ +PGG   +    +Y D ++ I+ +++E N+ GD+FP++  C+GF+ L ++ +++ N+L +++
Sbjct:   26 INNRPIIGILTQPTDGDM----TTFGSQYIAASYVKYIESAGARVVPILYDIDIKSLTELMGSINGVFFPGGGVDFNNQTVYTDTIQSIWSQVVEFNNNGDYFPLWGTCMGFQELALLSADNFNLLSSYN 151          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGH_MOUSE (Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  308 RPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYPGGWAK--NGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVSEDRNILETFD 679
            RP+IG++     G   +L N     YIAASYVK++ES GARV+P+  +  +    E    +NG+L PGG A   +  Y  + +  F K LE  D G HFPV+  CLGFE L ++VS + N+L + D
Sbjct:   33 RPIIGVVMQECFGKMAKLGNY----YIAASYVKYIESAGARVVPIRPDLSDAEYEELFRSINGVLLPGGGANLTDSGYSRVAKIFFSKALESFDNGGHFPVWGTCLGFEELSVLVSGE-NLLTSTD 153          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGHB_DICDI (Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = 2
Query:  296 SLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYPGG---WAKNGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVSEDRNILETFD 679
            ++N  PVIGIL+ P   +   ++     +Y+ ASYVK+VES GARV+P+ +N+ +E L    + +NGIL PGG   +     Y   +  I+  +L+ N  GD+FP++  CLG E +  + +E  ++L  F+
Sbjct:   22 TINNTPVIGILTQPFPSS---INIKYGDNYLMASYVKYVESAGARVVPIFYNQDDESLTTIFKQINGILLPGGDVDFKTEIQYVKTLTLIWDYVLDVNINGDYFPLWGTCLGLEEIVSLQAESFDVLTDFN 149          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGH_RAT (Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 54/121 (44.63%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  308 RPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIP--LIFNEPE-EILFEKLELVNGILYPGGWAK--NGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVSED 655
            RP+IGI+     G   +L       YIAASYVKF+ES GARV+P  L  N+ + E LF     +NG+L PGG A   +  Y  + +  F K LE  D GD+FPV+  CLG E L ++VS D
Sbjct:   33 RPIIGIIMQECYGNMTKLGRF----YIAASYVKFIESAGARVVPIRLDLNDAQYETLFRS---INGVLLPGGGANLTHSGYSRVAKIFFTKALESFDNGDYFPVWGTCLGLEELSVLVSND 146          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGH_BOVIN (Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  281 PAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPL---IFNEPEEILFEKLELVNGILYPGGWAK--NGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVS 649
            PAP P    +P+IGIL       + R   A    YIAASYVKF+ES GARV+P+   + NE  E LF+    +NG+L+PGG        Y  + +  +   ++    GD+FPV+  CLGFE L  +VS
Sbjct:   27 PAPTPK---KPIIGILMQKCHNKNMR---ALGKYYIAASYVKFLESAGARVVPVRLDLKNEEYEKLFKS---INGVLFPGGSVNLMRSGYARVAKMFYNLSIKSFGEGDYFPVWGTCLGFEELIYLVS 145          
BLAST of FC932330 vs. ExPASy Swiss-Prot
Match: GGH_HUMAN (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  308 RPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPE---EILFEKLELVNGILYPGGWA--KNGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLXMIVS 649
            +P+IGIL         ++       YIAASYVK++ES GARV+P+  +  E   EILF+    +NGIL+PGG    +   Y  + +  +   ++  D GD+FPV+  CLGFE L +++S
Sbjct:   33 KPIIGILMQK---CRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKS---INGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLIS 145          
The following BLAST results are available for this feature:
BLAST of FC932330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GGH_ARATH4.019e-6368.36Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
GGH_SOYBN4.169e-5265.27Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1[more]
GGHA_DICDI2.231e-2136.15Gamma-glutamyl hydrolase A OS=Dictyostelium discoi... [more]
GGH_MOUSE5.687e-1741.27Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE... [more]
GGHB_DICDI2.161e-1635.88Gamma-glutamyl hydrolase B OS=Dictyostelium discoi... [more]
GGH_RAT8.212e-1644.63Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=G... [more]
GGH_BOVIN9.079e-1540.63Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2... [more]
GGH_HUMAN5.885e-1438.66Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
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Properties
Property NameValue
Genbank descriptionC34207D11EF PostHarveN Citrus clementina cDNA clone C34207D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932330 ID=FC932330; Name=FC932330; organism=Citrus clementina; type=EST; length=680bp
GGTGCGCTGTGCAAGCTCGTCACTCTATGTCTCTATGAAGCTACCGGCAC
AGCAGCTCTTTTACCCATCTATCCTCAACTACGTTTGCTTTACACCAAGT
ATTTTTCCCAAAATGCCCTCGTCTCCCACCAGGCGGAAGCCGCGGAACTG
CCTATGGATTCCGATTCTCCTGTGCCTATTCAACGAACTTTCTTTCGCTG
AAGCCGAGTCATCGACGATTCTTCTACCGAGTCAACAGCACAATGCTGAC
TCAGTGAGTACTACCTTCTCTGCTCATTGTCCTGCTCCCGATCCGAGTTT
GAATTACCGGCCGGTAATCGGTATTCTAAGTCATCCGGGCGACGGCGCTT
CGGGGAGGCTGAGTAACGCCACCAACGCGTCTTATATCGCCGCGTCGTAC
GTGAAGTTCGTTGAATCAGGAGGCGCTCGTGTCATCCCTCTCATTTTCAA
TGAACCTGAAGAGATTCTTTTTGAGAAGCTTGAATTGGTGAACGGTATAC
TGTATCCTGGCGGTTGGGCTAAAAACGGTTTGTACTACGATATTGTTGAA
AAAATTTTCAAGAAAATTTTAGAGAAGAATGATGCGGGCGATCATTTTCC
GGTATATGCCATTTGCTTAGGCTTTGAACTTTTATNCATGATCGTTAGCG
AGGACAGAAACATTCTGGAAACATTTGATG
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