FC932337

Overview
NameFC932337
Unique NameFC932337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932337_ssr565 microsatellite FC932337_ssr565:565..576. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.950e-80
Identity = 147/221 (66.52%), Postives = 178/221 (80.54%), Query Frame = 2
Query:   50 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVA-SFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQS-PQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            +NKQVI  D+V+GFPKESD    T ++ L+VPEGSK ++L+KNLYLSCDPYMR RM K D  S +A ++ PG+P+ GYGVS+V++S HP+YKK DL+WG+  WEE S+I     +  KI  T+VPLSYYTG+LGMPG+TAY G YE+ SPKKG  VYVSAASGAVGQLVGQFAK++GC+VVGSAGSKEKVDLLK KFGFDDAF   E +DL AALKRCFP+
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPK 222          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.210e-76
Identity = 144/222 (64.86%), Postives = 176/222 (79.28%), Query Frame = 2
Query:   50 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVA---SFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQS-PQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFP 703
            +NKQVIL DYV+GFP ESD    T ++ L+VPEG+ +++L+KNLYLSCDPYMR RM K D PS  A   ++ PG+P+ GYGVS++++S HP+YKK DL+WG+ +WEE S+I        KI  T+VPLSYYTG+LGMPG+TAY G YE+ SPK+G  VYVSAASGAVGQLVGQ AK++GC+VVGSAGSKEKVDLLK KFGFDDAF   E +DL AALKRCFP
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPD-PSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFP 223          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 96/220 (43.64%), Postives = 126/220 (57.27%), Query Frame = 2
Query:   50 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVL-DSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            S +Q+ L+    G P   D +  T    + VPE  +  +L+K LY+S DPYMRGRM   D  S+V  F   + LSG  +++V+ D  H   KK D+V G  SW+E S + S   L KI  +  P S Y GILGM GLTAY GL ++  PK+G  V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK +  FD+A       D+  AL+   P+
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAV-SESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPD 214          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 87/222 (39.19%), Postives = 123/222 (55.41%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  G P +SD ++ T    +++P  +   +LL+ L+LS DPYMR    +L         K G+ + G  V++V++S +P +    LV   + W   S+    QL  L+      +PLS   G +GMPG+TAY GL E+   K G  V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK K GFD AF       L+  LK+  P+
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRL---------KEGDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPD 209          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 79/203 (38.92%), Postives = 113/203 (55.67%), Query Frame = 2
Query:   35 GEEAVSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFD 643
            G++   N++ +L+    G P   + ++        V    +  +LL+ +YLS DPYMRGRMS  D+PS+      G  + G  VS+V++S HP+Y+  D V G + W++   I S   L+K+ D     S+  G+LGMPG TAY GL ++  PK+G  + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD
Sbjct:    2 GQQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFD 197          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 85/222 (38.29%), Postives = 119/222 (53.60%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  G+P  S+ ++ T    +++P      +LL+ L+L+ DPYMR    KL         K G+ + G  V++V++S +  +    +V  L  W   S+     L  L+      +PLS   G +GMPGLTAY GL ++   K G  V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AF       L+  LK+  PE
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKT----VELPPLKNGEVLLEALFLTVDPYMRIAARKL---------KEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPE 209          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 86/222 (38.74%), Postives = 119/222 (53.60%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILD--TNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  GFP + + ++ T     ++P  +   +LL+ L+LS DPYMR    KL         K G+ + G  V++V++S +  + K  +V  L  W   S+     L    ++    +PLS   G +GMPGLTAY GL ++   K G  V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AF       L+ AL+   P+
Sbjct:    2 VQAKSWTLKKHFEGFPTDGNFELKT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKL---------KEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPD 209          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 90/224 (40.18%), Postives = 121/224 (54.02%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKIL----DTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  G+P  SD ++ T    +++P      +LL+ LYL+ DPYMR             S K G+ + G  V++V++S +  +    +V   + W   S I + + L K+L    DT +PLS   G +GMPGLTAY GL ++   K G  V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A        L+ ALK   PE
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKT----VELPPLKDGEVLLEALYLTVDPYMR---------IMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDT-LPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPE 209          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 84/226 (37.17%), Postives = 121/226 (53.54%), Query Frame = 2
Query:   47 VSNKQVILSDYV---TGFPKESD-MKIITGSINLKVPEGSKDT-LLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTN----VPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRC 697
            VSN  VI+  Y+    G+P   + +       +L+  +  ++T +LLKN+Y S DPY+R RM      S++   + G+P     V+KV+ ST   YK    V  ++ WEE + + S Q L  +   N    +PL  + G LGMP  TAY GL  +  PK G  +Y+SAASGAVGQ+ GQ AK +G HVVGS GS EK  +  +  G+D  F   + +   A  + C
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFV-SKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPFKALPRLC 225          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 86/222 (38.74%), Postives = 118/222 (53.15%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  GFP +S+ ++ T     ++P  +   +LL+ L+LS DPYMR    KL         K G+ + G  V++V++S +  +    +V  L  W   S+     L  L       +PLS   G +GMPGLTAY GL ++   K G  V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AF       L+ AL+   P+
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKL---------KEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPD 209          
The following BLAST results are available for this feature:
BLAST of FC932337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH8.950e-8066.52Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.210e-7664.86Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU2.726e-3643.64Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RABIT3.449e-3139.19Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
YNCB_ECOLI2.235e-3038.92Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_PIG1.227e-2838.29Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_MOUSE1.227e-2838.74Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN1.602e-2840.18Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
YKM8_SCHPO2.092e-2837.17Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_RAT6.088e-2838.74Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34207E06EF PostHarveN Citrus clementina cDNA clone C34207E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932337 ID=FC932337; Name=FC932337; organism=Citrus clementina; type=EST; length=722bp
GATCCAAAAACAAAATCTACATAAAAAAATGGCGGGTGAAGAAGCAGTGA
GCAACAAGCAGGTGATTCTGAGCGACTACGTGACAGGGTTTCCAAAAGAA
TCAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGG
CTCAAAAGACACATTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTT
ACATGAGAGGACGTATGAGCAAGCTTGATAAGCCTTCGTTTGTTGCCTCC
TTCAAGCCTGGCGAGCCTTTGAGCGGATATGGAGTGTCCAAAGTGTTGGA
TTCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCA
GTTGGGAGGAGTGCAGTCTCATCCAATCACCACAACTTCTGATTAAAATT
CTGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCC
TGGTTTGACTGCATATGGTGGTTTATATGAGCTTTCCTCTCCTAAGAAAG
GAGGGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGCCAGCTTGTT
GGGCAATTTGCGAAGTTGGTTGGTTGCCATGTTGTTGGAAGTGCCGGAAG
CAAAGAAAAGGTCGATCTGTTGAAGAACAAGTTTGGGTTTGATGACGCTT
TTAAACTATAGGAAAGAACAGACTTAGATGCAGCTCTTAAGAGGTGCTTT
CCTGAAGTATCGACATCTATTT
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