FC932338 | Citrus Genome Database

Overview


Name	FC932338
Unique Name	FC932338
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	734

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC932338_ssr144	microsatellite	FC932338_ssr144:144..155.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591	contig	Ccv1_Contig591:6..739.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.120e-75
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 2

Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLG
Sbjct:   75 FFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLG 170

HSP 2 Score: 114.005 bits (284), Expect = 2.120e-75
Identity = 50/64 (78.12%), Postives = 61/64 (95.31%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            PIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRKMDLDFLFHMFF
Sbjct:   13 PIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFF 76

HSP 3 Score: 27.335 bits (59), Expect = 2.120e-75
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3

Query:  186 MAQAVEDWYKQM 221
            MAQAVE+WY+QM
Sbjct:    1 MAQAVEEWYRQM 12

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.120e-75
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 2

Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLG
Sbjct:   75 FFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLG 170

HSP 2 Score: 114.005 bits (284), Expect = 2.120e-75
Identity = 50/64 (78.12%), Postives = 61/64 (95.31%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            PIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRKMDLDFLFHMFF
Sbjct:   13 PIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFF 76

HSP 3 Score: 27.335 bits (59), Expect = 2.120e-75
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3

Query:  186 MAQAVEDWYKQM 221
            MAQAVE+WY+QM
Sbjct:    1 MAQAVEEWYRQM 12

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.035e-74
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 2

Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FFLARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLG
Sbjct:   75 FFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLG 170

HSP 2 Score: 114.005 bits (284), Expect = 1.035e-74
Identity = 50/64 (78.12%), Postives = 61/64 (95.31%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            PIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRKMDLDFLFHMFF
Sbjct:   13 PIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFF 76

HSP 3 Score: 27.335 bits (59), Expect = 1.035e-74
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3

Query:  186 MAQAVEDWYKQM 221
            MAQAVE+WY+QM
Sbjct:    1 MAQAVEEWYRQM 12

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.680e-46
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 2

Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FFLARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYLS SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLG
Sbjct:   75 FFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLG 170

HSP 2 Score: 122.479 bits (306), Expect = 5.647e-30
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFSRTILQAS*REFLQGKDCRFL 477
            PIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNFL+FRKMDLDF+FHMFF     +       +GK   FL
Sbjct:   13 PIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFL 97

HSP 3 Score: 28.4906 bits (62), Expect = 5.647e-30
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 3

Query:  186 MAQAVEDWYKQM 221
            MAQAVE+WYKQM
Sbjct:    1 MAQAVEEWYKQM 12

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 2

Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FFLARYCKLLEENSFRG+T DFLYMLLFGAT LTG VLIGGMIPYLS SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLG
Sbjct:   75 FFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLG 170

HSP 2 Score: 122.865 bits (307), Expect = 4.337e-30
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFSRTILQAS*REFLQGKDCRFL 477
            PIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNFL+FRKMDLDFLFHMFF     +       +GK   FL
Sbjct:   13 PIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFL 97

HSP 3 Score: 28.4906 bits (62), Expect = 4.337e-30
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 3

Query:  186 MAQAVEDWYKQM 221
            MAQAVE+WYKQM
Sbjct:    1 MAQAVEEWYKQM 12

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.205e-39
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2

Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FL RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+G
Sbjct:   77 FLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMG 160

HSP 2 Score: 76.2554 bits (186), Expect = 8.205e-39
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF  +  +FLF+M F
Sbjct:   14 PPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIF 77

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.205e-39
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2

Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FL RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+G
Sbjct:   77 FLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMG 160

HSP 2 Score: 76.2554 bits (186), Expect = 8.205e-39
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF  +  +FLF+M F
Sbjct:   14 PPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIF 77

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.205e-39
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2

Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            FL RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+G
Sbjct:   77 FLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMG 160

HSP 2 Score: 76.2554 bits (186), Expect = 8.205e-39
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF  +  +FLF+M F
Sbjct:   14 PPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIF 77

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.036e-35
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 2

Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            F+ RYC++LEE SFRGRTADF++M LFG   +T   L+G +            FL  +LT M+VYVWS+++P + ++F GL TF A +LPW L+G
Sbjct:   77 FVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF-----------FLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMG 160

HSP 2 Score: 72.4034 bits (176), Expect = 1.036e-35
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            P +TRTY  A ++TT    L+++SPF L  +P LV + +Q WRLITNFLFF  +   F F+M F
Sbjct:   14 PAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLF 77

[Close]

BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.289e-35
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694
            F  RYC +LEE SFRGR ADF+YM LFGA  +            LS  F +I+FL  + T+M+VY+WS++NP I M+F G+ TFTA YLPWVLL
Sbjct:   75 FTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMI-----------LSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLL 157

HSP 2 Score: 63.5438 bits (153), Expect = 2.289e-35
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1

Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFS 417
            P +TR Y  A ++ T    L+ ++PF+L  +  L+++ YQFWRLIT+F FF      FLF+M F+
Sbjct:   12 PPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFT 76

The following BLAST results are available for this feature:

BLAST of FC932338 vs. ExPASy Swiss-Prot

BLAST of FC932338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23


Match Name	E-value	Identity	Description
DERL2_ORYSJ	2.120e-75	90.63	Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P...	[more]
DER22_MAIZE	2.120e-75	90.63	Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1	[more]
DER21_MAIZE	1.035e-74	89.58	Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2	[more]
DER22_ARATH	6.680e-46	92.71	Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ...	[more]
DER21_ARATH	1.943e-45	91.67	Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ...	[more]
DERL2_PONAB	8.205e-39	49.47	Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1	[more]
DERL2_MOUSE	8.205e-39	49.47	Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2	[more]
DERL2_HUMAN	8.205e-39	49.47	Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1	[more]
DERL3_BOVIN	1.036e-35	47.37	Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1	[more]
DERL2_CAEEL	2.289e-35	53.19	Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34207E07EF PostHarveN Citrus clementina cDNA clone C34207E07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC932338 ID=FC932338; Name=FC932338; organism=Citrus clementina; type=EST; length=734bp
GCCTCAAAAGACGAAAAGAATCGAAAGCTCTCTCCCGATCTATCTCCACA
ATCAAAACCCCCCCTTTTTTTTTCACCACTTCACTCAGAAATCTTTAAAT
TTTCAAAAAGAAAAAAAAAATCAGCACACTTTCAGGGCTCTAGAGATAGA
TAGATAAACCATATAGTCAAAAAAATTAAAAGAAAATGGCTCAAGCTGTT
GAAGATTGGTACAAACAGATGCCCTATCATCACCCGCACGTATCTCACAG
CCGCTATCGTCACCACCGTCGGCTGCTCTCTCGATATAATATCTCCTTTT
AATCTGTGCTTGCACCCAACGTTAGTAGTTAAGCATTATCAGTTTTGGCG
CCTTATCACCAATTTTCTCTTCTTCCGGAAAATGGATTTAGATTTTTTGT
TCCATATGTTTTTTTCTCGCACGATACTGCAAGCTTCTTGAAGAGAATTC
CTTCAGGGGAAGGACTGCAGATTTCTTGTACATGCTTTTATTTGGAGCCA
CTTTTCTAACCGGCACTGTTCTTATTGGGGGGATGATACCTTACTTGTCA
GAATCATTTGCAAAAATCATTTTCCTTAGCAATTCATTGACACTCATGAT
GGTTTATGTATGGAGCAAACAAAATCCTTTCATCCACATGAGTTTTTTGG
GCCTTTTTACATTTACAGCAGCTTACTTACCATGGGTGCTCTTGGGATCT
CAGTCTTCGTGGCGCTAGCGCTGGGTGGATTGCT