FC932366

Overview
NameFC932366
Unique NameFC932366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9407 contig Ccv1_Contig9407:2..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT11_ARATH (Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.273e-63
Identity = 126/193 (65.28%), Postives = 137/193 (70.98%), Query Frame = 1
Query:   91 LSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT-GDL 666
            +SCSA  LA   GPNAT   +AA+ IC QL  +NNKF DTA+A+D+TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLD                  +PSNGFIG+H F LK  PT++ DYS FLYQW               ERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWAS   T GDL
Sbjct:    1 MSCSATDLAVLLGPNAT---AAANYICGQLGDVNNKFIDTAFAIDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGKHYFGLKDIPTASADYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASPFRTDGDL 190          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT13_ARATH (Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 8.637e-63
Identity = 121/195 (62.05%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   79 MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGD 663
            M+ +++CSA  LA+  GPNAT   +AA  IC QL  +NNKF+D A+A+D+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                    S GFIGRHNFAL+ FPT   DYS+FLYQW               ERTQFVAYLIYSSFLTGFVYPVVSHWFWS DGWAS   + D
Sbjct:    1 MSGAITCSAADLATLLGPNAT---AAADYICGQLGTVNNKFTDAAFAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGGSSEGFIGRHNFALRDFPTPTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASPFRSAD 192          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT15_ARATH (Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.598e-62
Identity = 119/195 (61.03%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   79 MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGD 663
            M+ +++CSA  L++  GPNAT   +AA  IC QL ++NNKF+D AYA+D+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                    S+GFIGRHNF L++FPT   DYS+FLYQW               ERT+FVAYLIYSSFLTGFVYPVVSHWFWS DGWAS   + D
Sbjct:    1 MSGAITCSAADLSALLGPNAT---AAADYICGQLGSVNNKFTDAAYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGESSDGFIGRHNFGLQNFPTLTSDYSFFLYQWAFAIAAAGITSGSIAERTKFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASPFRSED 192          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT12_SOLLC (Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.247e-61
Identity = 119/193 (61.66%), Postives = 137/193 (70.98%), Query Frame = 1
Query:   79 MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT 657
            MA++++CSA +L    G +A +AT+AA  ICS+  A++   ++T YAVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                   PSNGFIG+H F LK FP+  FDYSYFLYQW               ERTQFVAYLIYSSFLTGFVYP+VSHWFWS DGWASAS T
Sbjct:    1 MASAMTCSAAELFPHLGSSA-NATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGFSYYLFGFAFAFGAPSNGFIGKHFFGLKEFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSGDGWASASKT 192          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT11_SOLLC (Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.072e-60
Identity = 116/189 (61.38%), Postives = 132/189 (69.84%), Query Frame = 1
Query:   91 LSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT 657
            ++CS D LA F GPN T+A +AAS IC+Q   ++++F DT YA+DSTYLLFSAYLVFSMQLGFAML AGSVR  NTMNIMLTNVLD                   PSNGFIGRH F LK  P+++FDY  FLYQW               ERTQFVAYLIYSSFLTGFVYPVVSHWFW+ DGWAS +N+
Sbjct:    1 MACSVDTLAPFLGPNTTNAVAAASYICNQFSGVSDRFVDTGYAIDSTYLLFSAYLVFSMQLGFAMLLAGSVR--NTMNIMLTNVLDAAAGGLFYYLFGFAFALGGPSNGFIGRHFFGLKEIPSNSFDYMNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWTPDGWASPTNS 187          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT14_ARATH (Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.938e-60
Identity = 115/198 (58.08%), Postives = 133/198 (67.17%), Query Frame = 1
Query:   79 MATSLSCSADQLASFF--GPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDL 666
            MA++LSCSA  L      G NAT A +AA  IC + + +  KF+D AYA+D+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNV+D                  +PSNGFIG+H F +  FP   FDY YFLYQW               ERTQFVAYLIYSSFLTG VYP+VSHWFWS DGWAS + + +L
Sbjct:    1 MASALSCSASDLIPLLSGGANATAAAAAAEYICGRFDTVAGKFTDAAYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVIDAAAGGLFYYLFGFAFAFGSPSNGFIGKHFFGMYDFPQPTFDYPYFLYQWTFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPARSENL 198          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT12_ARATH (Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.179e-57
Identity = 116/193 (60.10%), Postives = 134/193 (69.43%), Query Frame = 1
Query:   94 SCSADQLASFFGP--NATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHN--FALKSFP-TSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT 657
            +CSA  L++      N+T + +AA+ +CSQ+  I+NK SDT YAVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                  TPSNGFIGRH+  FAL S+P     D+S+FLYQW               ERTQFVAYLIYS+FLTGFVYP VSHWFWS DGWASAS +
Sbjct:    7 TCSAVDLSALLSSSSNSTSSLAAATFLCSQISNISNKLSDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGAISYYLFGFAFAFGTPSNGFIGRHHSFFALSSYPERPGSDFSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTFLTGFVYPTVSHWFWSSDGWASASRS 199          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT11_ORYSJ (Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.633e-53
Identity = 111/188 (59.04%), Postives = 124/188 (65.96%), Query Frame = 1
Query:   94 SCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT 657
            +C+AD LA   GP A +AT     +C       N+F+DT  AVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                  TPSNGFIG+  F LK  P + FDY +FL+QW               ERTQFVAYLIYS+FLTGFVYPVVSHW WS DGWASAS T
Sbjct:    3 TCAAD-LAPLLGPVAANATD---YLC-------NRFADTTSAVDATYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGTPSNGFIGKQFFGLKHMPQTGFDYDFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRT 179          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT12_ORYSJ (Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.637e-53
Identity = 110/189 (58.20%), Postives = 121/189 (64.02%), Query Frame = 1
Query:   91 LSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT 657
            ++  AD L    G   T A +A   +C       N+F+DT  AVDSTYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                   PSNGFIG+H F LK  P   FDYS+FL+QW               ERTQFVAYLIYS+FLTGFVYPVVSHW WS DGWASAS T
Sbjct:    1 MATCADTLGPLLG---TAAANATDYLC-------NQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGAPSNGFIGKHFFGLKQVPQVGFDYSFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRT 179          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT13_ORYSJ (Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.807e-51
Identity = 110/197 (55.84%), Postives = 126/197 (63.96%), Query Frame = 1
Query:   79 MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASN-TGDL 666
            MAT L    D L    G  A ++T AA+ IC       N+F+DT+ AVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKN+MNIMLTNVLD                  TPS GFIG+  F LK  P + +DY +FL+QW               ERT+F AYLIYS+FLTGFVYPVVSHWFWS DGWASA   TG L
Sbjct:    1 MATCL----DSLGPLLG-GAANSTDAANYIC-------NRFTDTSSAVDATYLLFSAYLVFAMQLGFAMLCAGSVRAKNSMNIMLTNVLDAAAGALFYYLFGFAFAFGTPSKGFIGKQFFGLKHMPQTGYDYDFFLFQWAFAIAAAGITSGSIAERTRFSAYLIYSAFLTGFVYPVVSHWFWSTDGWASAGRLTGPL 185          
The following BLAST results are available for this feature:
BLAST of FC932366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMT11_ARATH2.273e-6365.28Ammonium transporter 1 member 1 OS=Arabidopsis tha... [more]
AMT13_ARATH8.637e-6362.05Ammonium transporter 1 member 3 OS=Arabidopsis tha... [more]
AMT15_ARATH5.598e-6261.03Putative ammonium transporter 1 member 5 OS=Arabid... [more]
AMT12_SOLLC1.247e-6161.66Ammonium transporter 1 member 2 OS=Solanum lycoper... [more]
AMT11_SOLLC3.072e-6061.38Ammonium transporter 1 member 1 OS=Solanum lycoper... [more]
AMT14_ARATH8.938e-6058.08Ammonium transporter 1 member 4 OS=Arabidopsis tha... [more]
AMT12_ARATH3.179e-5760.10Ammonium transporter 1 member 2 OS=Arabidopsis tha... [more]
AMT11_ORYSJ1.633e-5359.04Ammonium transporter 1 member 1 OS=Oryza sativa su... [more]
AMT12_ORYSJ3.637e-5358.20Ammonium transporter 1 member 2 OS=Oryza sativa su... [more]
AMT13_ORYSJ5.807e-5155.84Ammonium transporter 1 member 3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC34207H02EF PostHarveN Citrus clementina cDNA clone C34207H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932366 ID=FC932366; Name=FC932366; organism=Citrus clementina; type=EST; length=668bp
GGTCCTTCTTGAAACAAAAACTGTAAAGTTTGACTTTTCAAACTCTTTCA
AATCTCAGGCAACCCAAGGTGGGAAGCCATGGCAACGTCCCTGAGTTGTT
CAGCGGACCAACTCGCCAGCTTCTTTGGCCCCAACGCCACCGACGCCACG
TCAGCAGCCTCCTTAATCTGCTCCCAACTCGAAGCCATCAACAATAAGTT
CTCCGACACCGCATACGCCGTCGACTCCACCTACCTCCTCTTCTCCGCCT
ACTTAGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCC
GTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACGC
CGCCGCCGGCGGCCTCTTCTACTACCTTTTCGGCTTCGCCTTCGCCTTCG
GCACCCCATCCAACGGCTTCATCGGCCGCCACAACTTCGCCCTCAAGTCC
TTCCCCACCTCCAACTTCGACTACAGCTACTTCCTCTACCAATGGGCCTT
CGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGCACCC
AGTTCGTCGCCTACTTAATCTACTCCTCCTTCCTCACGGGCTTCGTCTAC
CCCGTCGTCTCCCATTGGTTCTGGTCCGTCGACGGCTGGGCCAGCGCCTC
TAACACCGGCGACCTCTT
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