FC932371

Overview
NameFC932371
Unique NameFC932371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932371_ssr83 microsatellite FC932371_ssr83:83..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15496 contig Ccv1_Contig15496:1..554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 8.732e-67
Identity = 114/153 (74.51%), Postives = 132/153 (86.27%), Query Frame = 2
Query:   62 KSALKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKL-DEQFGRHRWVEYAEKSRYNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHSKGHFLNPEHKDWSGYQPWEPSKKE 517
            KSAL++IRE+GLG F+R ++EEGF+R L DGNL+QTK+HN GATLVGVDKFGNKYYQKL D Q+GRHRWVEYA K RYNASQVP EWHGWLH +TDHTGDELL LKPKRYGLEH+EN SGEG+ +IYHSKGH LNP  K+W+ YQ W P+K +
Sbjct:    7 KSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 50/132 (37.88%), Postives = 65/132 (49.24%), Query Frame = 2
Query:   71 LKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 445
            L  + +RGL          G+LR L   N +      R  TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLHCMTD           K     H+ NLSG  ++++ +S
Sbjct:    3 LLQVLKRGLQQVSGHGGLRGYLRVLFRANDV------RVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYS 128          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 2
Query:   71 LKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 445
            L  + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     H+ N++G  E+++ +S
Sbjct:    3 LVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQYVPYS 128          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 2
Query:   71 LKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 445
            L  + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     H+ N++G  E+++ +S
Sbjct:    3 LVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 2
Query:   71 LKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 445
            L  + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     H+ N++G  E+++ +S
Sbjct:    3 LVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  104 FLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKS--RYNASQVPPEWHGWLHCMTDHTGDELLMLKP---KRYGLEHRENLSGEGEEFIYHSKGHFLNPEHKDWSGYQPWEPSKKE*F 523
            F + +KE G ++A+L    +      R  TLVG D FGN+YY+       R+RWVE+ +K    Y+A+QVPPEWH WLH    H  D+   +KP   + + LEH+EN S      IY  K +   P     +  Q W+P +K  F
Sbjct:   15 FGQMVKEIGGVKAVLKKRYLMDA--TRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLH----HITDDAPSVKPPPTQDWVLEHKENTS------IYADKKYV--PYSTTRTKIQGWQPGEKPQF 145          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 2
Query:  182 RGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 445
            R  TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLHCMTD           K     H+ N+S   E+++ +S
Sbjct:   34 RIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYS 128          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = 2
Query:   71 LKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 445
            L  + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH +TD       +   K     H+ N++G  E+++ +S
Sbjct:    3 LVQVLKRGLQRITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of FC932371 vs. ExPASy Swiss-Prot
Match: NDUAC_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  191 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSRYNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSG 418
            TLVGVDK GN+YY+   E +GRHRWVEY +    + + +PPE+H W+H ++D    E+L   P  Y   H  N +G
Sbjct:   33 TLVGVDKVGNRYYENRQEIYGRHRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSP-TYKRPHIANPTG 107          
The following BLAST results are available for this feature:
BLAST of FC932371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NDUAC_ARATH8.732e-6774.51Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUAC_BOVIN3.149e-1637.88NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_GORGO1.013e-1434.85NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_PANTR1.323e-1434.85NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_HUMAN1.323e-1434.85NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_CAEEL1.323e-1437.24Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUAC_MOUSE2.257e-1442.11NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_PONPY5.028e-1434.09NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_DICDI8.576e-1444.74NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionC34207H07EF PostHarveN Citrus clementina cDNA clone C34207H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932371 ID=FC932371; Name=FC932371; organism=Citrus clementina; type=EST; length=550bp
GAAAAGAAATAAATCGAAGAGAGGAAGCTATTAGAACGAAGGAAAATAGA
AAATGGCTGTGAAGAGCGCGTTGAAGTCGATCAGAGAGAGAGGTCTCGGT
TCCTTCCTTCGCGAGCTCAAGGAAGAAGGCTTCCTGAGGGCACTTCTTGA
TGGAAATCTCATGCAAACCAAGTTACATAATAGAGGGGCAACGCTTGTTG
GAGTTGATAAATTTGGTAACAAGTATTATCAGAAACTTGACGAGCAATTT
GGAAGACACAGGTGGGTTGAATATGCAGAGAAGAGTCGCTACAATGCTTC
CCAGGTGCCACCAGAATGGCACGGTTGGCTGCACTGCATGACTGATCACA
CAGGAGATGAGCTTCTGATGCTGAAACCGAAGAGATACGGACTTGAGCAC
AGGGAAAATTTATCGGGAGAGGGTGAGGAGTTTATCTATCATTCCAAAGG
ACATTTCCTCAATCCAGAGCATAAAGACTGGTCAGGGTACCAACCATGGG
AACCCTCCAAGAAAGAGTAATTTCTTCATCAACTTCCCATGTTAACTTGC
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