FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932372_ssr9 microsatellite FC932372_ssr9:9..42. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932372_ssr65 microsatellite FC932372_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.067e-67
Identity = 133/159 (83.65%), Postives = 136/159 (85.53%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL 703
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV NKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNV E  F +
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.067e-67
Identity = 133/159 (83.65%), Postives = 136/159 (85.53%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL 703
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV NKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNV E  F +
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 116/165 (70.30%), Postives = 129/165 (78.18%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL-PDISK 718
            LIKLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAG+ERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+ NK DM E K+ V +S+G++LADEYGIKF ETSAK ++NV E    L  DI K
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKK 178
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 111/154 (72.08%), Postives = 125/154 (81.17%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAG+ERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+ NK DM E K+ V +S+G++LADEYGIKF ETSAK ++NV E
Sbjct:   15 LVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEE 167
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 102/154 (66.23%), Postives = 123/154 (79.87%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            LIKLLL+GDSGVGKSCLLLR                  KI+ +++DGK +KLQIWDTAG+ERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILV NK D+ E KR V  ++GQALADE+G +F+ETSAK N++V E
Sbjct:   13 LIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEE 166
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.266e-52
Identity = 108/159 (67.92%), Postives = 120/159 (75.47%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL 703
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+ NK D  E +R V   +GQALADE G+KF E SAKTN+NV E  F L
Sbjct:    9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTL 166
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.683e-50
Identity = 104/169 (61.54%), Postives = 124/169 (73.37%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLP-DISKTADQ 730
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++ NK D+++ KR V   +G+ LA +YGIKF ETSAK N+NV    F L  DI    D+
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.683e-50
Identity = 104/169 (61.54%), Postives = 124/169 (73.37%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLP-DISKTADQ 730
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++ NK D+++ KR V   +G+ LA +YGIKF ETSAK N+NV    F L  DI    D+
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.683e-50
Identity = 104/169 (61.54%), Postives = 124/169 (73.37%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLP-DISKTADQ 730
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++ NK D+++ KR V   +G+ LA +YGIKF ETSAK N+NV    F L  DI    D+
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.683e-50
Identity = 104/169 (61.54%), Postives = 124/169 (73.37%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLP-DISKTADQ 730
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++ NK D+++ KR V   +G+ LA +YGIKF ETSAK N+NV    F L  DI    D+
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB1BV_BETVU1.067e-6783.65Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH1.067e-6783.65Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_DICDI5.494e-5670.30Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI1.598e-5572.08Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA3.937e-5466.23GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO1.266e-5267.92GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_RAT7.683e-5061.54Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE7.683e-5061.54Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA7.683e-5061.54Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN7.683e-5061.54Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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