FC932385

Overview
NameFC932385
Unique NameFC932385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10980 contig Ccv1_Contig10980:758..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.722e-95
Identity = 169/232 (72.84%), Postives = 195/232 (84.05%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            SAMIACYA+NG AFEA   FREM+ E+ D  PNSVTMVSV          EQGK+IHG ILRRGLDSILPV+SALVTMY RCGKLE+GQ VFD M  RDVVSWNSLISSYGVHGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFE+M ++H ++P +EHYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+   +L
Sbjct:  252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFAL 483          

HSP 2 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 53/169 (31.36%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  162 QGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM--VRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +GK IH  + RRG  S + +++ LV MYAR G ++    VF  M  R+VVSW+++I+ Y  +G   +A++ F+EM+      SP+ ++ VSVL AC+    +E+GK++   + +  +  + P +   + +V + GR  KLE   ++ + +  +     W SL+ S  +H
Sbjct:  200 KGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVH 364          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.189e-52
Identity = 101/232 (43.53%), Postives = 147/232 (63.36%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +AMI+ Y +NG+  +A  LFREM  +  +  PN VT+  +            GK +H  +     +S + V +AL+ MYA+CG +   + +FD M K++ V+WN++IS YG+HG G +A+ IF EM+  G++P+P++F+ VL ACSHAGLV+EG  +F SM   +   PSV+HYACMVD+LGRA  L+ A + IE + IEPG  VW +LLG+CRIH +  LA   S+    L
Sbjct:  389 NAMISGYTQNGLTEDAISLFREM--QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFEL 618          

HSP 2 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 56/216 (25.93%), Postives = 103/216 (47.69%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +AMI  Y  NG    +  LF+E+++    L   S T+VS+               IHG  L+    S   V +AL T+Y++  ++E  + +FD   ++ + SWN++IS Y  +G    AI +F+EM     SP+P++   +L AC+  G +  GK + + +R       S+     ++ +  +   + EA ++  DL  +     W +++    +H
Sbjct:  291 NAMIHGYTSNGETELSLSLFKELMLSGARL--RSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499          

HSP 3 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 45/196 (22.96%), Postives = 97/196 (49.49%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIED 596
            + MI+ Y +N M  E+ ++FR++I ES     ++ T++ +            G  IH    + G  S   V++  +++Y++CGK+++G  +F    K D+V++N++I  Y  +G    ++ +FKE++  G      + VS++    H  L+    +    ++   +   SV     +  +  + N++E A K+ ++
Sbjct:  189 NTMISGYRKNEMYVESIQVFRDLINESCTRL-DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY--AIHGYCLKSNFLSHASVS--TALTTVYSKLNEIESARKLFDE 379          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.291e-49
Identity = 96/227 (42.29%), Postives = 148/227 (65.20%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 689
            + +I+ YA+NG A EA E++  M  E  ++  N  T VSV           QG  +HG +L+ GL   + VV++L  MY +CG+LE    +F  + + + V WN+LI+ +G HG+G KA+ +FKEM+  GV P  I+FV++L ACSH+GLV+EG+  FE M+ ++ + PS++HY CMVD+ GRA +LE A K I+ + ++P   +WG+LL +CR+H NV+L + AS+
Sbjct:  419 NTIISGYAQNGFASEAIEMYNIM-EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644          

HSP 2 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 65/234 (27.78%), Postives = 118/234 (50.43%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKGFL 698
            +++I  Y  N     A  LF+EM +    + P+ +T++S+             + + G  LR+G  L+ I  + +A+V MYA+ G ++  + VF+ +   DV+SWN++IS Y  +G+  +AI+++  M   G ++ +  ++VSVL ACS AG + +G  L   + K  +    V     + D+ G+  +LE+A  +   + R+   P  W +L+     H + E A    K  L
Sbjct:  317 NSIIKAYELNEQPLRAISLFQEMRLSR--IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT-IGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL-DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVP--WNTLIACHGFHGHGEKAVMLFKEML 544          

HSP 3 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 455
            +AMI+ Y ++G A EA  L   +         +SVT+VS+           +G  IH   ++ GL+S L V + L+ +YA  G+L   Q VFD M  RD++SWNS+I +Y ++    +AI +F+EM    + P  ++ +S+    S  G
Sbjct:  220 NAMISGYCQSGNAKEALTLSNGL------RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 99/233 (42.49%), Postives = 146/233 (62.66%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSLS 707
            + MI  Y +N M  EA EL+  M  E+    P++V++ SV            GK IHG I R+ L   L + +AL+ MYA+CG LE  + VF++M  RDVVSW ++IS+YG  G G  A+ +F ++   G+ P  I+FV+ L ACSHAGL+EEG+  F+ M   + + P +EH ACMVDLLGRA K++EA + I+D+ +EP  +VWG+LLG+CR+H + ++   A+     L+
Sbjct:  278 NVMIGVYMKNAMPVEAVELYSRM--EADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508          

HSP 2 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL--VEEGKMLFESMRKEHMV 509
            + MI  Y  NG   E  ++F  M     ++ P+  T   V            G+ IHG   + GL S L V + LV+MY +CG L   + V D M +RDVVSWNSL+  Y  +     A+++ +EM    +S    +  S+L A S+     V   K +F  M K+ +V
Sbjct:  109 NVMIRSYVNNGFYGEGVKVFGTMC--GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLV 275          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 93/225 (41.33%), Postives = 144/225 (64.00%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 683
            +A+I+ Y++NG+A++  EL+ +M  +S  +CP+  T+VSV          + G  +   +   G    + V +A ++MYARCG L   + VFD M  + +VSW ++I  YG+HG G   + +F +MI  G+ P    FV VL ACSH+GL ++G  LF +M++E+ + P  EHY+C+VDLLGRA +L+EA + IE + +EP   VWG+LLG+C+IH NV++AE A
Sbjct:  226 NAVISGYSQNGLAYDVLELYEQM--KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELA 448          

HSP 2 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 58/216 (26.85%), Postives = 115/216 (53.24%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +A+I+ Y  N    +A+ +FR M  +   +  +SVTM+ +            G+ +HG  ++ GLDS + V+++ +TMY +CG +E G+ +FD M  + +++WN++IS Y  +G     ++++++M   GV P P + VSVL +C+H G  + G  + + +     V P+V      + +  R   L +A  + + + ++     W +++G   +H
Sbjct:  125 NALISGYTANSKVTDAAYMFRRM--KETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV-PNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMH 336          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.152e-48
Identity = 96/232 (41.38%), Postives = 141/232 (60.78%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            + MI+ Y  +    EA  +F EM      + P+ V+M SV          ++ K +H CI   GL+S L + +AL+ MYA+CG L+  + VF+ M +R+VVSW+S+I++  +HG    A+ +F  M    V P+ ++FV VL  CSH+GLVEEGK +F SM  E+ + P +EHY CMVDL GRAN L EA ++IE + +     +WGSL+ +CRIH  +EL + A+K  L L
Sbjct:  313 TTMISAYVESDYPQEALRVFEEMCCSG--IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILEL 542          

HSP 2 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 53/249 (21.29%), Postives = 113/249 (45.38%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMY-------------------------------ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLLGSCRIH 656
            + MI  Y R G+  EA +LF EM  +  ++ P+ + + ++             + I+  ++   +     +++ALVTMY                               ++CG+L+  Q +FD  +K+D+V W ++IS+Y    Y  +A+++F+EM   G+ P  +S  SV+ AC++ G++++ K +   +    +    +     ++++  +   L+    + E +   P   V  W S++ +  +H
Sbjct:  181 NTMIERYCRFGLVDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL-ESELSINNALINMYAKCGGLDATRDVFEKM---PRRNVVSWSSMINALSMH 423          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.249e-48
Identity = 89/225 (39.56%), Postives = 142/225 (63.11%), Query Frame = 3
Query:   15 MIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 689
            MI  Y R G   EA +LF +M  +   + P+  +++S+          + G+ +H  ++R   D  + V S L+TMY +CG+L   + VFD    +D++ WNS+IS Y  HG G +A++IF EM   G  P+ ++ +++L ACS+AG +EEG  +FESM  +  V P+VEHY+C VD+LGRA ++++A ++IE + I+P   VWG+LLG+C+ H  ++LAE A+K
Sbjct:  302 MIKAYERKGFELEALDLFAQM--QKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAK 524          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.578e-47
Identity = 91/232 (39.22%), Postives = 150/232 (64.66%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            + +I+ +A+   A EA +LFR+M+ ES  + PN  T+ ++            GK +HG ++R G++      ++ + MYARCG +++ + VFD M +R+V+SW+S+I+++G++G   +A+  F +M    V P+ ++FVS+L ACSH+G V+EG   FESM +++ V P  EHYACMVDLLGRA ++ EA   I+++ ++P    WG+LL +CRIH  V+LA   ++  LS+
Sbjct:  281 TTLISGFAKCERAVEAFDLFRQMLRES--ILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSM 510          

HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 45/201 (22.39%), Postives = 99/201 (49.25%), Query Frame = 3
Query:   60 ELFREM-IMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            E+FR   +M    L  +++T++ +          + GK +HG  +RR  +D    + ++++ MY +C  L+  + +F+    R+VV W +LIS +       +A  +F++M+   + P+  +  ++L +CS  G +  GK +   M +  +   +V ++   +D+  R   + + A+ + D+  E     W S++ +  I+
Sbjct:  193 EVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAV-NFTSFIDMYARCGNI-QMARTVFDMMPERNVISWSSMINAFGIN 391          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.578e-47
Identity = 93/223 (41.70%), Postives = 148/223 (66.37%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 677
            +++++ YA++GM+ EA E+FR ++ ++  +  N++T+ +V            GK IH  ++R GL+  + V ++++ MY +CG++E  +  FD M  ++V SW ++I+ YG+HG+  KA+++F  MI  GV P+ I+FVSVL ACSHAGL  EG   F +M+    V P +EHY CMVDLLGRA  L++A  +I+ ++++P   +W SLL +CRIH NVELAE
Sbjct:  255 NSIMSVYAQSGMSNEAFEVFRRLV-KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAE 476          

HSP 2 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 53/223 (23.77%), Postives = 117/223 (52.47%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHD----LCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGK--LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            ++MI  Y  NG A +A  LF++++++ +D    +  +S+ +VSV             + IH  +++RG D  + V + L+  YA+ G+  + + + +FD +  +D VS+NS++S Y   G   +A ++F+ ++ +  V+ + I+  +VL A SH+G +  GK + + + +  +    V     ++D+  +  ++E A K  + ++     + W +++    +H
Sbjct:  146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL-EDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMH 366          

HSP 3 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 53/161 (32.92%), Postives = 75/161 (46.58%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF------VSVLGACSHA---GLVE 464
            +++IA  AR+G + EA   F  M   S  L P   +                GK  H      G  S + V SAL+ MY+ CGKLE  + VFD + KR++VSW S+I  Y ++G    A+ +FK+++          F      VSV+ ACS     GL E
Sbjct:   45 NSVIADLARSGDSAEALLAFSSMRKLS--LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.691e-47
Identity = 100/235 (42.55%), Postives = 147/235 (62.55%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSLSLQ 713
            +AMI+ Y  N    +  +LFR M+ E   + PNS  + S           + G+ IH  + +  L + +  +++L++MY +CG+L     +F+ M K+DVV+WN++IS Y  HG   KA+ +F+EMI + + P  I+FV+VL AC+HAGLV  G   FESM +++ V P  +HY CMVDLLGRA KLEEA K+I  +   P   V+G+LLG+CR+H NVELAE A++  L L+ Q
Sbjct:  253 NAMISGYVENSRPEDGLKLFRAMLEEG--IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQ 485          
The following BLAST results are available for this feature:
BLAST of FC932385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
PP265_ARATH7.722e-9572.84Pentatricopeptide repeat-containing protein At3g46... [more]
PP341_ARATH6.189e-5243.53Pentatricopeptide repeat-containing protein At4g30... [more]
PP348_ARATH1.291e-4942.29Pentatricopeptide repeat-containing protein At4g33... [more]
PP271_ARATH8.365e-4942.49Putative pentatricopeptide repeat-containing prote... [more]
PP223_ARATH3.179e-4841.33Putative pentatricopeptide repeat-containing prote... [more]
PP311_ARATH4.152e-4841.38Pentatricopeptide repeat-containing protein At4g14... [more]
PPR84_ARATH9.249e-4839.56Pentatricopeptide repeat-containing protein At1g56... [more]
PPR14_ARATH1.578e-4739.22Pentatricopeptide repeat-containing protein At1g06... [more]
PP258_ARATH1.578e-4741.70Pentatricopeptide repeat-containing protein At3g26... [more]
PP316_ARATH2.691e-4742.55Pentatricopeptide repeat-containing protein At4g16... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208A09EF PostHarveN Citrus clementina cDNA clone C34208A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932385 ID=FC932385; Name=FC932385; organism=Citrus clementina; type=EST; length=733bp
GGCCGGGGAGTGCTATGATTGCTTGTTATGCTAGAAATGGGATGGCTTTT
GAGGCGTCGGAGCTTTTTCGTGAAATGATAATGGAGTCTCACGATTTATG
TCCGAATTCAGTGACTATGGTTAGTGTGCTTCAAGCTTGCGCGGCTCTTG
CTGCTTTAGAACAAGGGAAGATGATACATGGGTGCATATTAAGGAGGGGT
CTTGATTCTATTTTGCCTGTTGTAAGTGCATTGGTGACAATGTATGCGAG
ATGTGGAAAGCTTGAATTAGGTCAATGTGTTTTTGATCATATGGATAAGA
GGGATGTCGTTTCTTGGAATTCTTTAATTTCAAGCTATGGGGTTCATGGA
TATGGAGGGAAAGCAATTCAAATTTTTAAAGAGATGATTTATCATGGAGT
TTCACCGAGTCCTATATCTTTTGTTAGTGTTTTGGGAGCTTGCAGTCATG
CAGGGCTTGTTGAGGAGGGGAAGATGTTATTTGAATCTATGCGTAAAGAG
CATATGGTACGTCCTAGCGTGGAGCATTATGCTTGTATGGTAGATCTTCT
TGGTCGTGCTAATAAGTTAGAAGAAGCAGCCAAGATTATAGAAGATTTGA
GAATTGAACCGGGACCTAAGGTTTGGGGTTCATTGCTTGGATCGTGTCGG
ATTCATTGTAATGTTGAGCTTGCTGAGAGAGCAAGCAAAGGCTTTTTGAG
CTTGAGCCTACAATGCAGGGAATTATGTACTTC
back to top