FC932386

Overview
NameFC932386
Unique NameFC932386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15500 contig Ccv1_Contig15500:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.124e-45
Identity = 94/230 (40.87%), Postives = 134/230 (58.26%), Query Frame = 2
Query:   32 VLPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLSQ--------EGEMGWMGDKMGEFFNE 697
            VLP +CIS IIS ++ RDAC ++     F+SA  SD VW+KFLP +YE                     YF LCHNP++I +G  SF L+K SGK+C M+ ++E +I WG++P YW W  +PESRF ++AEL  V WFEI+G+   ++LS  T Y+AY+VFK  D   G    P+E G+   G ++ +R+   +  P+D     +        + E GWM  ++GEFFNE
Sbjct:   63 VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFASKKEL------YFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFIYFIG-PRDRRGRRETRDVTKPDQREDGWMEAELGEFFNE 285          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41
Identity = 89/223 (39.91%), Postives = 126/223 (56.50%), Query Frame = 2
Query:   38 PPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEER---YRVVLDLPKDMPQLSQEGEMGWMGDKMGEFFNE 697
            P +CIS IIS +  RDAC ++     F+S   SD +WEKFLP+DYE                     YF LC++P++ ++   S  L+K SGK+C M+ A    I WG+ P YW W  +PESRF +VA+L+ V WFEI+GR  T++LS +T Y+AY+VFK VD  YGF+   IE  V   G +   R   +   +   +      ++ E GWM  ++GEFFN+
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSSKKEL------YFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFND 234          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 88/220 (40.00%), Postives = 127/220 (57.73%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDT-RYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLSQEGEMGWMGDKMGEFF 691
            LP ECI+ +IS ++  DACR S    + +SAADS+  WE+FLPSDY                      +   C +P++I +G  SF ++K SGKKC+M+ AR+  I W ++P +WIW  +P+SRF EVA L +V WFEI+G+I T +LS  T Y+AYLVFK  +   +GFE  P+E       ++     RV L   K   Q S+E   GW+  ++GE++
Sbjct:    6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFSNKQL------FLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFRSTRTEVYNNRRVFL---KSGTQESRED--GWLEIELGEYY 214          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 93/227 (40.97%), Postives = 128/227 (56.39%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLS--QEGEM------GWMGDKMGEFF 691
            LP +CI++I+SL+T  D CR S    IF+SAA SD VW  FLP+D+                      +F L  NP++IN   +SF L+++SG KC+M+ AR   I WG+   YW W  LP +RF EVAEL +VWW EI G+I   +LS  T+YAAY VFK+  + YGF R+P+E  +    +DTE    VV      + Q S  +EG+       GW   ++G+FF
Sbjct:    4 LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLPTRKQL------FFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETSLVL--ADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFF 221          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 89/230 (38.70%), Postives = 130/230 (56.52%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRARE-FYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLSQEGEM--------GWMGDKMGEFFNE 697
            LP +CIS IIS ++ RDAC ++     F+SA +SD VW+KFLPSDY                      YF +C NP+++ +G  SF L+KE+GKKCFM+  ++  +I W +TP YW W  +PE+RF EV EL  V WFE++G + TK LS  T Y+AY+VFK  +        P+E  V   G ++ +R+ +    P D  +  +  ++        GWM  ++G+FFNE
Sbjct:   45 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSSKKEL------YFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVGQESSQRH-IYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNE 267          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 86/228 (37.72%), Postives = 123/228 (53.95%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDT-------EERYRVVLDLPKDMPQLSQEGEMGWMGDKMGEFFNE 697
            LP +CIS IIS ++ RD C S+     F  A   D +WEKFLPS+YE                     YF LC++P+++ +G  SF L+  SGKKC ++ A+E +I  GN P YW W  L ES F +V EL     F++ G + T+ILSL T Y+ Y+V+K  D R+G    PI+ GV F+G +        +E      + PK     S++   GWM  ++G+FFN+
Sbjct:   48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSSKKDL------YFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGFKGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFND 269          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 86/233 (36.91%), Postives = 123/233 (52.79%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLSQEGEM------------GWMGDKMGEFFNE 697
            LP EC+S I+S ++ +DAC  +     F SA  SD VWEKF+P +YE                     YF LC   ++I++G  S  ++K + K+C M+ A    I WGN+P  W W   P++RF  VAEL  V  FEI+GRI ++++S KT Y+AY+V+K ++  YGFE   +E  V   G D EE  R  +   + M +  +  +             GWM  K+GEFFNE
Sbjct:   39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLSKKEL----YFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNE 267          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 79/183 (43.17%), Postives = 110/183 (60.11%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTR-YGFERRPIEFGVHFEG 580
            LP +CIS++IS ++ RDAC  +      KSAA SD VWE FLPS+Y                      +  L  N +++ NG  SF ++K SGKKC+M+ A E  I WG++P+YW W  +PES+F +VAEL+ V WFE++G+I   +LS  T Y+ Y+VFK  + R YGF+  P+E GV F G
Sbjct:   35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLSKKEI------FLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVG 211          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 86/235 (36.60%), Postives = 121/235 (51.49%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYI-EWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDT-------------EERYRVVLDLPKDMPQLSQEGEMGWMGDKMGEFFNE 697
            LP  CIS IIS ++  DAC ++    IF+SA  SD VWEKFLP+DYE                     YF LC++P++I +G MS  L+K SGK+C M+ A    +    +    ++W   PESRF  VA L+  + FE   R+ T++LSL+T Y+ Y+VFK  D   GF+   IE  V   G ++             + R R V+  P       +  E GWM  ++GEF+NE
Sbjct:   27 LPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYES------LITPSRVFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVGEESFRSFICFDTHGKGQARKRKVVAKP-------ELREDGWMETEIGEFYNE 248          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 84/223 (37.67%), Postives = 118/223 (52.91%), Query Frame = 2
Query:   35 LPPECISRIISL-STARDACRSSIACPIFKSAADSDYVWEKFLPS-DYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLSQEGEMGWMGDKMGEFFNE 697
            LP +C++ I S  ST RDA  +++    F    +SD VWEKFLP  DY                      YF LC +P   +NG MSF LDK SGKKC M+ A++  I     P YW W  +PESRF EV EL  +  F+I+G + T+I+S  T Y+AY+V+       GF+  PI+ GV F+     + + +  D        S++ + GWM  K+G+F+NE
Sbjct:   37 LPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSSKKEL------YFALC-DPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGVGFQRHGMSKTF-IRFD--------SKKRQDGWMEAKIGDFYNE 243          
The following BLAST results are available for this feature:
BLAST of FC932386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FB95_ARATH3.124e-4540.87F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
P2B10_ARATH1.229e-4139.91F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
P2B12_ARATH1.961e-3940.00Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
P2B11_ARATH1.961e-3940.97F-box protein PP2-B11 OS=Arabidopsis thaliana GN=P... [more]
PP2B2_ARATH3.346e-3938.70Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
PP2B6_ARATH1.076e-3737.72Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]
PP2B8_ARATH4.090e-3736.91Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
PP2B1_ARATH1.190e-3643.17F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
SKIP3_ARATH3.961e-3236.60F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
PP2B5_ARATH9.132e-2937.67F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]

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Properties
Property NameValue
Genbank descriptionC34208A10EF PostHarveN Citrus clementina cDNA clone C34208A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932386 ID=FC932386; Name=FC932386; organism=Citrus clementina; type=EST; length=707bp
GGTTGCAAGAAGTAAAATGGATATAACATTTGTTCTGCCACCAGAGTGCA
TTTCCCGCATAATTTCTCTTTCAACTGCTCGCGATGCCTGCAGATCATCA
ATAGCATGTCCCATCTTCAAATCAGCTGCGGATTCAGATTATGTATGGGA
GAAGTTTCTGCCATCCGATTACGAGCAGATCATTTCCGATTCGGCCTCTG
ATTCATCTTTGATTACTTCTTTGTCTAAGAAGGATCTTTATTTTCATCTT
TGTCACAACCCCATCATCATCAATAATGGTACTATGAGCTTTGTGCTGGA
TAAAGAAAGCGGGAAAAAGTGTTTCATGGTTAGAGCAAGAGAGTTTTATA
TTGAATGGGGAAATACACCCAGTTATTGGATATGGTCTTATCTACCAGAG
TCTAGGTTTGCTGAAGTGGCTGAACTCAAGCTTGTGTGGTGGTTTGAAAT
TAAAGGAAGGATAGAGACAAAAATTTTGTCCTTGAAAACTATTTACGCAG
CTTACCTTGTGTTCAAGTTTGTCGATACCCGGTATGGGTTTGAAAGAAGA
CCTATAGAGTTTGGTGTCCACTTTGAGGGAAGCGATACTGAGGAAAGGTA
TAGAGTGGTACTAGATCTTCCGAAGGATATGCCTCAGCTATCTCAAGAAG
GGGAGATGGGGTGGATGGGAGATAAAATGGGTGAGTTCTTTAATGAAATG
GAGATGA
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