FC932387

Overview
NameFC932387
Unique NameFC932387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932387_ssr30 microsatellite FC932387_ssr30:30..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14992 contig Ccv1_Contig14992:45..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.127e-60
Identity = 108/174 (62.07%), Postives = 134/174 (77.01%), Query Frame = 2
Query:  209 EKWGTHVMGTPAAPTCHPDNKKXXXXXXXXXXDNRAQYNNHHHPYLQYSPVERPS-GSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSY 727
            +KWGTHVMG PAAP  HPDN++          DN+      + PY+ YSPVE P+  +P+E ++ +F++WS KAET+A N+WHNLKT  S+SE AWGK+NLTAKAI  GGFE++++Q F T  NETLKKTFACYLST+TGPVAGT+YLSN  VAFCSDRPL FTAPSGQ++WSY
Sbjct:   37 KKWGTHVMGAPAAPVAHPDNQQAAAWVAG---DNQ---QTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSY 204          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  335 HPYLQYSPVERPSGS---PMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSY 727
            +PY+  SP E    S    ME++  V   W       + K E+LA N W +L+T  S ++AA G++  + K    GG+E I++QTF T   E L  +FACYLSTS GPV G LY+S+  +A+CSD PLS+     Q  WSY
Sbjct:   96 NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSY 235          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 2
Query:  335 HPYLQYSPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKT-WSY 727
            +PY+  SP  R   + M+S+ +    W       + KAE LA N W +LKT  SV++AA  ++    K +  GG+E ++KQTF    +E L KT+ACYLSTS GPV G +YLS   +AF SD PLS+    G++T WSY
Sbjct:   65 NPYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTLWSY 198          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  335 HPYLQYSPVERPSGS---PMESILNVFNSWSN-------KAETLANNIW-HNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPL 688
            +PY+  +P E    S    MES+  V   W         KAE+LA N W H L+       AA G++  + K +  GG+E I++QTF T   E L+ +FACYLSTS GPV G LY+S   +A+CSD  L
Sbjct:   55 NPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 46/149 (30.87%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  305 DNRAQYNNHHH------PYLQY-SPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSG 709
            D+ A++  + H      PY+   SP         + +L V N         + KAE L   +  +LK + S+S+AA  +++   K I  GG E ++++ F     E L  +F CY+ST++GPV G +Y+SN  +AFCSD  +   + +G
Sbjct:   13 DSTAKHKTNSHGGRYDNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAG 161          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  422 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQ 712
            K ++  N +    K    ++E    K++L A+ ++ GG E IYK+ F     E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G+
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGE 152          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  422 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSG 709
            K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G
Sbjct:   56 KTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQG 151          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  422 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKT 718
            K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K + CYLST+ G +AG L++S+  +AFCS+R +  T+P G  T
Sbjct:   48 KTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLT 146          
BLAST of FC932387 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  422 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSG 709
            K +   N +    K    ++E    K++L A+ ++ GG E I+K+ F   + E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQG 150          
The following BLAST results are available for this feature:
BLAST of FC932387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH6.127e-6062.07GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH2.432e-2441.84GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH5.990e-2343.17GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH5.802e-1841.09Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML2_ARATH2.282e-1430.87GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML8_ARATH6.638e-1436.08Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH1.479e-1337.50GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH1.931e-1337.37GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH4.303e-1335.42GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34208A11EF PostHarveN Citrus clementina cDNA clone C34208A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932387 ID=FC932387; Name=FC932387; organism=Citrus clementina; type=EST; length=727bp
GAATCAGGCATAGAATCCCTCAAAGAAGCTCTTTCTTTCTTGCAAATTAC
TTGGCTTCAAATTTAAAACCAAAATGAACGGCACCACCACCCAGGAATCA
AACCCTTCTCATCACCAAACATCACTAAGCAGTACTAATCAAGAAATACA
ATCTCATCAAGCTGCCGGTCCATCATCGTCATCTGGACCAGCAAGCACTG
CAAGTGCTGAGAAATGGGGAACTCATGTAATGGGGACGCCTGCTGCTCCC
ACGTGTCATCCGGACAACAAGAAAGCAGCCTTGTGGGGAGCTGGAGCTGC
TGGTGATAATCGAGCTCAATACAACAATCATCACCACCCGTACCTCCAGT
ACAGTCCCGTTGAAAGGCCAAGCGGCAGCCCCATGGAATCTATTCTCAAT
GTCTTCAACTCTTGGAGCAACAAGGCTGAGACCTTGGCCAATAACATTTG
GCACAACCTTAAAACGAACTCATCTGTGTCAGAGGCAGCATGGGGGAAGA
TGAATCTGACTGCCAAAGCAATAAAAGGAGGAGGGTTTGAGACTATATAC
AAGCAAACTTTTGCAACCCACCAGAATGAGACTTTGAAGAAGACATTTGC
CTGTTACCTTTCAACATCAACAGGACCAGTGGCTGGAACTCTGTATCTCT
CCAATGTTCATGTGGCTTTTTGCAGCGATCGCCCCCTGTCTTTCACTGCA
CCCTCTGGTCAGAAGACTTGGAGCTAC
back to top