FC932389

Overview
NameFC932389
Unique NameFC932389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932389_ssr44 microsatellite FC932389_ssr44:44..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8917 contig Ccv1_Contig8917:183..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932389 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.390e-88
Identity = 156/226 (69.03%), Postives = 182/226 (80.53%), Query Frame = 3
Query:   81 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFIXKITRYEKVVNIPKLMTIL 758
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFI KI+RY KVV+IP  MT+L
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVL 570          
BLAST of FC932389 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.412e-86
Identity = 149/196 (76.02%), Postives = 169/196 (86.22%), Query Frame = 3
Query:  171 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFIXKITRYEKVVNIPKLMTIL 758
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFI KI+RY KVVNIP  MTIL
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTIL 567          
BLAST of FC932389 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.409e-86
Identity = 155/208 (74.52%), Postives = 174/208 (83.65%), Query Frame = 3
Query:  138 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFIXKITRYEKVVNIPKLMTIL 758
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFI KI+RY KVVNIP  MT+L
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVL 572          
BLAST of FC932389 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.909e-28
Identity = 72/194 (37.11%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  195 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT---GRPNVDWCE--SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFIXKITRYEKVVNIPKLMTIL 758
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T   G   +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FI KI  Y ++ +IP  MTIL
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTIL 192          
The following BLAST results are available for this feature:
BLAST of FC932389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH4.390e-8869.03Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH1.412e-8676.02Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH2.409e-8674.52Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
YL780_MIMIV3.909e-2837.11Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionC34208B01EF PostHarveN Citrus clementina cDNA clone C34208B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932389 ID=FC932389; Name=FC932389; organism=Citrus clementina; type=EST; length=758bp
GACTTTCAGCTTCTTACATGAATTGAAAGCTGAAAGCCACCCAACACACA
CACATAGATTCCAATCAATAGTACGAAATTCTAACAGATCCAAATTCAAA
TCGAAACCCGATCCAGTCTCATCTCTCCTTTGCATTCACTCACCATTACC
CAATGGGTTTCCCAGCCAACGGCTCCGACGCCGGCTCCAAGCCGCTCAAG
TTTCTCATCTACGGCCGCACTGGCTGGATCGGGGGCTTGCTCGGCAAGCT
CTGCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGCCTCGAGA
ACCGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCACCCACGTC
TTCAACGCGGCCGGGGTGACCGGTAGGCCTAACGTCGACTGGTGCGAATC
GCATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTTACGCTTG
CTGACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGCCACCGGC
TGCATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCATCGGCTT
CAAGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCCAAGACTA
AGGCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTGTACTTTG
CGTGTCAGGATGCCGATCTCATCAGATTTATCCAATCCTCGCAACTTCAT
CANCAAGATCACTCGATATGAAAAGGTAGTCAACATTCCCAAACTCATGA
CTATCTTG
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