FC932422

Overview
NameFC932422
Unique NameFC932422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15396 contig Ccv1_Contig15396:5..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.136e-48
Identity = 97/180 (53.89%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  141 HGGPPSSQPYSAQYGAPPTAHPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSTFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREAL 680
            +GG P    +   YG  P    +   YGAPP    YG+                                  PFASL+PS FPPGTDPNIVACFQ ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIGPKEF  +F SLQNWR++FE+ D+DRSG+ID+  +R+AL
Sbjct:  114 YGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQASYGS----------------------------------PFASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDAL 259          
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.436e-44
Identity = 102/212 (48.11%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  132 TSHHGGPPSSQPYS---AQYGAPPTAHPYSAQYGAPPTA---------------QP------YGARP-----HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSTFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREAL 680
            +S +G PP S PY+     Y  PP   PY   YGAPP +               QP      YGA P                                    +PFASL+PS F PGTDPNIVACFQ AD+D SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIGPKEF  +F+SLQNWR++FE+ D+DRSG+ID   +R+AL
Sbjct:   67 SSSYGAPPPSAPYAPSPGDYNKPPKEKPYGGGYGAPPPSGSSDYGSYGAGPRPSQPSGHGGGYGATPPHGVSDYGSYGGAPPRPASSGHGGGYGGYPPQASYGSPFASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDAL 278          
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 57/190 (30.00%), Postives = 82/190 (43.16%), Query Frame = 3
Query:  123 QGYTSHHGGPPS-SQPYSAQYGAPPTAHPYSAQYGAPPTAQPYGA-RPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASL-MPSTFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREAL 680
            QGY+   G  P   QP  A Y   P A  Y + YG+ P  Q YG   P+                               P+         PPG +P     F   D D SG I+ KEL+ AL ++N S F+  T  +++  F  T + ++    F  ++  LQ WRA F++ DRDRSG I++  + +AL
Sbjct:    7 QGYSGPGGNAPQWQQPPRAPYAGGPAAGQYGSPYGSAPPGQQYGGGSPYGSYGQPGPRAPYGGGQAPGGPYGGYGQPQGGPYRQQGSAGNVPPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQAL 196          
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  384 FPPGTDPNIVACFQLADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLM--YTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREA 677
            F P T P IV  F+ ADR+ SG +++ EL+ ALS S     S RT+RLL+  Y     +  ++GPKE++++++ L  WRA+F + DRDRSGK++S  +R+A
Sbjct:   49 FSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDA 149          
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 58/203 (28.57%), Postives = 85/203 (41.87%), Query Frame = 3
Query:  123 QGYTSHHGGPPSSQPYSAQYGAPPTAHPY--SAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-----PFASLMPSTF---------PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREAL 680
            QGY    G PP + P +  YG          +A YG P    PYG+ P                               +     P+ S    ++         PPG DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  ++M  F  +N+ +I    F  ++  +Q WR +F++ DRDRSG I+   + +AL
Sbjct:    8 QGYHGAAGQPPGA-PQTNYYGGQQYGGGVQPAASYGRPAPGAPYGSPPSGGVYGHPVPGSAAPGAPGGPYGGQAPGGPYSVPGSTPYGSQQHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMFDKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQAL 209          
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 59/186 (31.72%), Postives = 78/186 (41.94%), Query Frame = 3
Query:  126 GYTSHHGGPPSSQPYSAQYGAPPTAHPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSTFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREAL 680
            GY S  GG PS  P S  YG  P   PY    G  P   PYG +P                                          PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  LQ WR +F++ DRDRSG I S  +++AL
Sbjct:   56 GYPSA-GGVPSGTP-SGPYGGIPPGGPY----GQLPPGGPYGTQPGHYGQGGV----------------------------------PPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQAL 201          
BLAST of FC932422 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 58/192 (30.21%), Postives = 80/192 (41.67%), Query Frame = 3
Query:  126 GYTSHHGGPPSSQPYSAQYGAPPTAHPYSAQYGAPPTAQPYG-ARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSTF-----PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSK*VREAL 680
            GY S  GG PS  P     G PP        YG  P   PYG A P                               +P+ +  P  +     PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T   +I    F  ++  LQ W+ +F++ DRD SG I S  +++AL
Sbjct:   55 GYPSA-GGTPSGTPGGPYGGGPP-----GGPYGGGPPGGPYGQAHP-------------------------------SPYGTQPPGPYGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTGRIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQAL 209          
The following BLAST results are available for this feature:
BLAST of FC932422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CML49_ARATH8.136e-4853.89Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.436e-4448.11Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_DANRE4.814e-1630.00Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
CML48_ARATH1.072e-1543.56Probable calcium-binding protein CML48 OS=Arabidop... [more]
PEF1_XENLA3.814e-1328.57Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE6.507e-1331.72Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_RAT2.472e-1230.21Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionC34208D10EF PostHarveN Citrus clementina cDNA clone C34208D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932422 ID=FC932422; Name=FC932422; organism=Citrus clementina; type=EST; length=682bp
GAAAAAAATTCAACCGAAGAAGCTTTAGACACGTCGGCTCTCTCTTGAGA
TTCAGCAACATGTCCGGCTATCCCCAACCTCCGCCCGGCTACGGCTACGG
CTCCGCACAGCCTCCGAGTTCTCAGGGCTACACTTCCCATCACGGCGGGC
CGCCGAGTTCTCAGCCCTACTCTGCTCAGTACGGCGCGCCGCCGACGGCT
CACCCCTACTCTGCTCAGTACGGCGCACCGCCGACGGCTCAGCCCTACGG
GGCACGGCCACACGCGGCTCCGTCCGCACCCTCTTATGGCGGGCCTTCTG
CGGCTCCTGCTTCTGCTCCAGGCGGCTACCCGCCGGCTCCGGGATCGTAC
GGTAATCCGTTTGCGTCTCTAATGCCGTCCACTTTTCCTCCCGGCACGGA
TCCGAACATCGTGGCGTGCTTCCAGTTGGCCGACCGGGACAACAGCGGCC
TCATCGACGATAAGGAGTTGCAAGGAGCCTTGTCTTCTTACAATCAGAGC
TTCAGCTTGAGAACCGTTCGTCTGCTTATGTACACATTCACCAACACTAA
CGCGAGAAAAATCGGGCCTAAGGAGTTCATCCAAGTGTTTCACAGTCTTC
AAAACTGGAGGGCCATGTTTGAGAAAGTGGACAGGGACAGGAGTGGAAAG
ATTGATTCGAAATGAGTGCGGGAGGCTCTTAT
back to top