FC932423

Overview
NameFC932423
Unique NameFC932423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14165 contig Ccv1_Contig14165:35..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT3_HUMAN (Glycerol-3-phosphate acyltransferase 3 OS=Homo sapiens GN=AGPAT9 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 63/208 (30.29%), Postives = 100/208 (48.08%), Query Frame = 2
Query:   98 SSIQEPLGKLRLRD--LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGH---DKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            S +++ L  LR RD  L D+     +   AIV+D  T+ F S +   WN            ++ L  +W  GV+ RY +L PLRV +  IG      S + + + L G      L+  L   +    C   V + +G + YH  +   +   + VANHTS ID +IL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   77 SPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFQYISLRLTMVWVLGVIVRYCVLLPLRVTLAFIG-----ISLLVIGTTLVGQLPDSSLKNWLSELVHLTCCRICVRALSGTIHYHNKQYRPQKGGICVANHTSPIDVLILTTDGCYAMVGQVHGGLMGIIQRAMVKACPHVWFERSEMKDR 279          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT3_MOUSE (Glycerol-3-phosphate acyltransferase 3 OS=Mus musculus GN=Agpat9 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 72/236 (30.51%), Postives = 109/236 (46.19%), Query Frame = 2
Query:    5 QLGMRSPGQLKSSSSELDLDRPNIEDYLPSGSSIQEPLGKLRLRD--LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW----NI---YLFP----LWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            Q G      LK+S+S   + R          S +++ L  LR RD  L D+     +   AIV+D  T+ F S +   WN     N+   Y+ P    +W  GV+ RY  L PLRV +  IG  + +     V  L      L+  L   +    C   V S +G + YH  +   +   + VANHTS ID +IL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   54 QKGAPKESALKNSASVGIIQRDE--------SPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFQYISPRLTMVWVLGVLVRYCFLLPLRVTLAFIGISLLIIGTTLVGQL--PDSSLKNWLSELVHLTCCRICVRSLSGTIHYHNKQYRPQKGGICVANHTSPIDVLILATDGCYAMVGQVHGGLMGIIQRAMVKACPHVWFERSEIKDR 279          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT3_RAT (Glycerol-3-phosphate acyltransferase 3 OS=Rattus norvegicus GN=Agpat9 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 65/205 (31.71%), Postives = 99/205 (48.29%), Query Frame = 2
Query:   98 SSIQEPLGKLRLRD--LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW----NI---YLFP----LWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            S +++ L  LR RD  L D+     +   AIV+D  T+ F S +   WN     N+   Y+ P    +W  GV+ RY  L PLRV +  IG  + +     V  L      L+  L   +    C   V S +G + YH  +   +   + VANHTS ID +IL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   77 SPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFHYISPKLTIVWVLGVLVRYCFLLPLRVTLAFIGISLLIIGTTLVGQL--PDSSLKNWLSELVHLTCCRICVRSLSGTIHYHNKQYRPQKGGICVANHTSPIDVLILATDGCYAMVGQVHGGLMGIIQRAMVKACPHVWFERSEIKDR 279          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPT3L_DANRE (Glycerol-3-phosphate acyltransferase 3-like OS=Danio rerio GN=agpat9l PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 74/241 (30.71%), Postives = 109/241 (45.23%), Query Frame = 2
Query:    2 NQLGMRSPGQLKSSSSELDLDRPNIEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIG--WIIFLSS---FIPVHSLLKGHDKLRKKLERCLVELICSFFVA-SWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            N L  R    L+    EL  +RP   D            G   L D+L  S    E+   IV+D  T+ F S +   WN            ++ L  LW  GVV RY IL PLR+ + TIG  W++  ++   F+P       + +++  L   LV L+C    A   +  + +H  +   +   + VANHTS ID +IL     +A++ Q H G +G+L   +  S   IWF RSE +DR
Sbjct:   70 NGLIQRDNSSLEQEIEELRRNRPKSADR-----------GDFTLSDVLYFSRKGFES---IVEDDVTQRFTSEELVSWNLLTRTNNNFQYISLRLTVLWVVGVVVRYCILLPLRITLTTIGLTWLVIGTTTVGFLP-------NCRVKNWLSE-LVHLMCYRICARGLSATIHFHNKQNRPKKGGICVANHTSPIDVVILANDGCYAMVGQVHGGLMGVLQRAMERSCPHIWFERSEMRDR 288          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT4_MOUSE (Glycerol-3-phosphate acyltransferase 4 OS=Mus musculus GN=Agpat6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 68/214 (31.78%), Postives = 101/214 (47.20%), Query Frame = 2
Query:   74 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK--LRKKLERCLVELIC-SFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            I++   SGSS  + L K    +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY  L PLR+ +   G  + +     V  L  G  K  L K      V L+C    V + T ++ YH  +   R   + VANHTS ID IIL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   92 IKEIRRSGSS--KALDKTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTILWGLGVLIRYCFLLPLRIALAFTGIGLLVVGTTMVGYLPNGRFKEFLSKH-----VHLMCYRICVRALTAIITYHNRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRAMVKACPHVWFERSEVKDR 298          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT3_CHICK (Glycerol-3-phosphate acyltransferase 3 OS=Gallus gallus GN=AGPAT9 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 58/177 (32.77%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  179 AIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICS-FFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            AIV+D  T+ F S +   WN            ++ L  +W  GV+ RY  L PLR  +  IG    +     V  L  G   L+  L   +V L CS   V + +G + YH      +   + VANHTS ID IIL     +A++ Q H G +G++    +++   +WF RSE KDR
Sbjct:  109 AIVEDEVTQRFSSEELVSWNLLTRTNVNFHYVSLRLTVVWVIGVIVRYCFLLPLRFTLAAIGITSMIVGTTVVGQLPNG--SLKNYLSE-VVHLTCSRILVRALSGTIHYHNKENKPQKGGICVANHTSPIDAIILTNDGCYAMVGQVHGGLMGVIQRATVKACPHVWFERSEIKDR 282          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT4_PONAB (Glycerol-3-phosphate acyltransferase 4 OS=Pongo abelii GN=AGPAT6 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 65/212 (30.66%), Postives = 97/212 (45.75%), Query Frame = 2
Query:   74 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK-LRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            I++   SGSS  + L      +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY  L PLR+ +   G  + +     V  L  G  K    K    +   IC   V + T ++ YH      R   + VANHTS ID IIL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   92 IKEIRRSGSS--KALDNTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFMSKHVHLMCYRIC---VRALTAIITYHDRENRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRAMVKACPHVWFERSEVKDR 298          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT4_HUMAN (Glycerol-3-phosphate acyltransferase 4 OS=Homo sapiens GN=AGPAT6 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 65/212 (30.66%), Postives = 97/212 (45.75%), Query Frame = 2
Query:   74 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK-LRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            I++   SGSS  + L      +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY  L PLR+ +   G  + +     V  L  G  K    K    +   IC   V + T ++ YH      R   + VANHTS ID IIL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   92 IKEIRRSGSS--KALDNTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFMSKHVHLMCYRIC---VRALTAIITYHDRENRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRAMVKACPHVWFERSEVKDR 298          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT3_DANRE (Glycerol-3-phosphate acyltransferase 3 OS=Danio rerio GN=agpat9 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 56/181 (30.94%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  182 IVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIG--WIIF---LSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVA-SWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            IV+D  T+ F S +   WN            ++ L  +W  GV  RY +L PLR+ +  IG  W++    L  F+P       + K++  L   LV + C    A   +  ++YH      +   + VANHTS ID +IL     +A++ Q H G +G++  +++ S   +WF RSE KDR
Sbjct:  116 IVEDQVTQRFSSEELASWNLLTRTNNNFRYISVRLTIIWGLGVFVRYCVLLPLRITLAVIGLSWLVIGTTLVGFLP-------NSKVKNWLSD-LVHITCYRICARGLSATIRYHNKENRPKKGGICVANHTSPIDIVILANDGCYAMVGQVHGGLMGVIQRSMVRSCPHVWFERSEMKDR 288          
BLAST of FC932423 vs. ExPASy Swiss-Prot
Match: GPAT4_BOVIN (Glycerol-3-phosphate acyltransferase 4 OS=Bos taurus GN=AGPAT6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 66/214 (30.84%), Postives = 100/214 (46.73%), Query Frame = 2
Query:   74 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK--LRKKLERCLVELIC-SFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLXSTILESVGCIWFNRSEGKDR 673
            I++   SGSS  + L      +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY +L  LR+ +   G  + +     V  L  G  K  L K      V L+C    V + T ++ YH  +   R   + VANHTS ID IIL     +A++ Q H G +G++   ++++   +WF RSE KDR
Sbjct:   92 IKEIRRSGSS--KALDNTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLIRYCLLLSLRIALAFTGISLLVVGTTMVGYLPNGRFKEFLSKH-----VHLMCYRICVRALTAIITYHDRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRAMVKACPHVWFERSEVKDR 298          
The following BLAST results are available for this feature:
BLAST of FC932423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GPAT3_HUMAN4.316e-1730.29Glycerol-3-phosphate acyltransferase 3 OS=Homo sap... [more]
GPAT3_MOUSE7.361e-1730.51Glycerol-3-phosphate acyltransferase 3 OS=Mus musc... [more]
GPAT3_RAT9.614e-1731.71Glycerol-3-phosphate acyltransferase 3 OS=Rattus n... [more]
GPT3L_DANRE6.232e-1630.71Glycerol-3-phosphate acyltransferase 3-like OS=Dan... [more]
GPAT4_MOUSE6.232e-1631.78Glycerol-3-phosphate acyltransferase 4 OS=Mus musc... [more]
GPAT3_CHICK1.063e-1532.77Glycerol-3-phosphate acyltransferase 3 OS=Gallus g... [more]
GPAT4_PONAB1.813e-1530.66Glycerol-3-phosphate acyltransferase 4 OS=Pongo ab... [more]
GPAT4_HUMAN1.813e-1530.66Glycerol-3-phosphate acyltransferase 4 OS=Homo sap... [more]
GPAT3_DANRE2.368e-1530.94Glycerol-3-phosphate acyltransferase 3 OS=Danio re... [more]
GPAT4_BOVIN6.890e-1530.84Glycerol-3-phosphate acyltransferase 4 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC34208D11EF PostHarveN Citrus clementina cDNA clone C34208D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932423 ID=FC932423; Name=FC932423; organism=Citrus clementina; type=EST; length=677bp
GAATCAATTGGGGATGAGGAGTCCAGGCCAGCTGAAATCGTCAAGCTCCG
AATTGGACTTGGACCGACCCAACATCGAAGACTATCTCCCTTCTGGATCC
TCCATTCAAGAGCCTCTCGGCAAGCTTCGCTTGCGTGATTTGCTTGACAT
TTCGCCTACGCTTACTGAGGCTGCTGGTGCCATTGTCGATGATTCATTTA
CGCGGTGTTTCAAGTCCAATCAACCAGAGCCTTGGAACTGGAATATATAT
TTGTTTCCTCTGTGGTGTTTTGGTGTGGTCTTTCGTTACTTCATTCTTTT
CCCTCTCAGGGTTATAGTATTGACGATAGGATGGATAATATTCCTTTCGT
CCTTCATTCCTGTGCATTCTCTGCTGAAAGGACACGATAAGTTGAGGAAA
AAGCTAGAGAGGTGTTTGGTGGAGTTAATTTGCAGTTTCTTTGTTGCTTC
ATGGACTGGAGTTGTCAAGTACCATGGGCCAAGGCCGAGCATGCGGCCTA
AGCAGGTTTTTGTGGCCAATCATACTTCCATGATAGACTTTATCATCTTA
GAGCAGATGACTGCATTTGCTGTTATTATGCAAAAGCATCCTGGATGGGT
TGGACTACTTNCAAGTACTATATTAGAGAGTGTAGGATGTATTTGGTTCA
ATCGTTCAGAAGGCAAGGATCGTGAAA
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