FC932424

Overview
NameFC932424
Unique NameFC932424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15509 contig Ccv1_Contig15509:1..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932424 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.124e-43
Identity = 80/179 (44.69%), Postives = 101/179 (56.42%), Query Frame = 1
Query:    7 CGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 543
            C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:   78 CSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of FC932424 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.623e-42
Identity = 78/180 (43.33%), Postives = 99/180 (55.00%), Query Frame = 1
Query:    4 NCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 543
            +C    GEY+C  C LFD D  K+QYH             +FFHC KC  C +  L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:   77 DCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of FC932424 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.624e-34
Identity = 65/176 (36.93%), Postives = 95/176 (53.98%), Query Frame = 1
Query:    7 CGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXX--NFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 528
            C  CMG Y+C  CKL+DDD +K  YH               ++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  200 CKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of FC932424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN1.124e-4344.69RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE1.623e-4243.33RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO3.624e-3436.93Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionC34208D12EF PostHarveN Citrus clementina cDNA clone C34208D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932424 ID=FC932424; Name=FC932424; organism=Citrus clementina; type=EST; length=755bp
GTTAATTGTGGTGTATGCATGGGTGAATACTTCTGCGAGAGTTGCAAGCT
GTTTGATGATGATACATCCAAGAAGCAATATCATTGTGATGGATGTGGAA
TATGCAGGATTGGTGGATGTGATAATTTCTTCCATTGCAACAAGTGTAGA
TGCTGCTACTCAATGCTTTTGAAGAACAGCCACCCATGTGTAGAAGGTGC
AATGCATCATGACTGCCCTGTCTGCTGTGAGTATTTATTCGAGACAAGAC
AGGATGTAATTGTCTTGCCGTGTGGGCATACCATTCACAAAAATTGCTTG
AAGGAGATGCGGGAACATCATCAATATGCCTGTCCTATCTGCTCCAAGTC
AGTCTGTGACATGTCCAAAGTATGGGAGAAATATGACAGGGAGATAGCGG
CTACTCCAATGCCAGAAGCTTACCTAAATAAAAAGGTTTGGATCCTTTGC
AATGACTGTGGTAAGACCTCTAATGTCCAGTTCCATGTGCTGGCTCAGAA
GTGCCCAAACTGCAAGTCCTACAACACTCGCTTGACCAGGGGCTGAGCAA
GTGGCAGTATTGTTAGCAATGATGGTGATGGTGATGGGAACTCTCTGTTT
GATGTGGGTGGGTTCGGGTCTTAATTAATCTTTTCAACCATCTCAGCCAC
AGTCGTTACTCATTATGAGGTAGTGGCTGCATCTACAACTTGCTCTGTGG
GGAGCAGTTAGTCTTCCTCGTGGGTGTTCTAGTCTAGCTCGTGGTGTTTG
AATCT
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