FC932425

Overview
NameFC932425
Unique NameFC932425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15510 contig Ccv1_Contig15510:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.614e-50
Identity = 98/136 (72.06%), Postives = 107/136 (78.68%), Query Frame = 2
Query:  308 KKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKK-XXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            ++VVE+TF+HFGKLDILVNAAAGNFL +AEDLSPNGFRTV+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH           TRNLALEWG DYDIRVNGIAPGPIG TPGM+KL
Sbjct:   77 RRVVEATFQHFGKLDILVNAAAGNFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPIGGTPGMSKL 212          

HSP 2 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 3
Query:   81 LESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKLWNQLLSILGSLTFL*MLRPATFL 386
            ++SPFK D+++G+VALITGGGSGIGFEIS+QFGKHGAS+AIMGRRKQVLD AVSALRSLGI+A+G EGDVR+QE A+++        G L  L       FL
Sbjct:    1 MDSPFKPDVVRGQVALITGGGSGIGFEISSQFGKHGASIAIMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHFGKLDILVNAAAGNFL 102          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 57/137 (41.61%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  302 TCKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            T    V+ T + FG++DIL+N AAGNFL  A  LS N F+TVM+ID++GTF          K             I+NISATL Y     Q+H          +TR+LA+EWG    +RVN +APGPI  T G  +L
Sbjct:   99 TILAAVDETLKTFGRVDILINNAAGNFLCPATSLSFNAFKTVMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAPGPISGTEGYRRL 227          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  317 VESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            V+   + FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L
Sbjct:   97 VDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRL 220          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  317 VESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            V+   + FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L
Sbjct:   97 VDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRL 220          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 2
Query:  317 VESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            V+   + FGK++IL+N AAGNFL  A  LS N F+TV+DID++GTF +   ++ Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L
Sbjct:   97 VDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIGTFNV--SSVLYKK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRL 220          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  317 VESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            V+   + FGK+DIL+N AAGNFL  A  LS N F+TV+DID++GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L
Sbjct:   97 VDQALKEFGKIDILINCAAGNFLCPASALSFNAFKTVVDIDTLGTFNV--SRVLYEK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRL 220          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: YXEK_CAEEL (Uncharacterized oxidoreductase F53C11.3 OS=Caenorhabditis elegans GN=F53C11.3 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.762e-18
Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 2
Query:  350 DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 685
            DIL+N AAGNF+++ E LSPN + T++DI   GT  +  E                   +L+I+     + + + +           +T++LA EW A + +R N IAPGPI
Sbjct:  107 DILINNAAGNFIMATERLSPNAYGTIIDIVLKGTLHVTTEL------GRRCIQQKRGASVLSITTLYAQSGAPFVVPSAVSKAGVENMTKSLASEW-AKHGLRFNAIAPGPI 211          

HSP 2 Score: 55.0694 bits (131), Expect = 4.762e-18
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 3
Query:  108 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-SLGIKAVGFEGDVRRQEHAKKLWNQLLSILG 344
            L GKVAL+TGGG+G+G  I+T F   GASVAI  RR  VL+     +R S G     F+ DV+      K ++ +   LG
Sbjct:   24 LNGKVALVTGGGTGLGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSSTGGVCEPFQMDVKDPAKVAKAFDAVEKKLG 103          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: YVX3_CAEEL (Uncharacterized oxidoreductase T05C12.3 OS=Caenorhabditis elegans GN=T05C12.3 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.047e-17
Identity = 42/129 (32.56%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  314 VVESTFEH----FGKL-DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 685
            +V  TF+     FGK  DILVN AAGNF+++ E LSPN   T++DI   GT  +  E  K                + +I+A    + + + +           +T++LA EW + Y +R N ++PGPI
Sbjct:   89 MVSDTFDKIDKKFGKHPDILVNNAAGNFIMATERLSPNAHGTIIDIVLKGTMNVTTELGK------RCIQSKTGASVTSITAAYARSGAPFIVPSAVSKAGVEIMTKSLATEW-SKYGLRFNAVSPGPI 210          

HSP 2 Score: 52.7582 bits (125), Expect = 1.047e-17
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 3
Query:   87 SPFKAD-ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLD-AAVSALRSLGIKAVGFEGDVR 293
            SP   D  LKGKVAL+TGGG+GIG  I+T F   GASVAI  RR + L+  A   +++ G     F  D++
Sbjct:   15 SPILRDGALKGKVALVTGGGTGIGKAIATTFAHLGASVAIAARRMEKLEQTAEEIMKTTGGICEPFRMDIK 85          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  314 VVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            +++   + FG+LD L+N AAGNF+  AE L+PNG++ V++I   GTF     A ++               ILN++AT  + A    +H          +TR LA+EWG+ Y IR N IAPGPI  T G  KL
Sbjct:   70 MIKEAVKAFGRLDALINNAAGNFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARH------WIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKL 196          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  308 KKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            +  V+ T E FGK+D ++  AAGNF+    +LSPN F++V+DID +G+F      LK LKK            IL +SAT HY    +Q H          + +NLA+E G    IR N IAPG I +T G+ +L
Sbjct:   93 ENAVKKTVEKFGKIDFVIAGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKK--------SKGSILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELG-PLGIRSNCIAPGAIDNTEGLKRL 218          
The following BLAST results are available for this feature:
BLAST of FC932425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DECR2_ARATH5.614e-5072.06Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_DANRE1.033e-1941.61Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
DECR2_PONAB8.741e-1942.42Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_HUMAN8.741e-1942.42Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
DECR2_MOUSE1.491e-1840.91Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
DECR2_RAT1.947e-1841.67Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
YXEK_CAEEL4.762e-1832.14Uncharacterized oxidoreductase F53C11.3 OS=Caenorh... [more]
YVX3_CAEEL1.047e-1732.56Uncharacterized oxidoreductase T05C12.3 OS=Caenorh... [more]
FADH_BACSU1.262e-1738.35Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
SPS19_YEAST3.673e-1739.26Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208E01EF PostHarveN Citrus clementina cDNA clone C34208E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932425 ID=FC932425; Name=FC932425; organism=Citrus clementina; type=EST; length=720bp
AAAAAGAAAAAAAACAGACACAACACAACCACAAGGACAAGCAGCAAAAG
CGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGTTCAAGGC
CGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGTTCGGGAA
TTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTCAGTTGCA
ATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTGCTCTTCG
GTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGTAGGCAGG
AACATGCAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGGGAAGCTTG
ACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAGCTGAGGAT
TTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCTGTCGGCAC
ATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAGGGTGGACCTG
GGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTGCTACTTTA
CATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCCAAGGCAGC
TGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGCTGACTATG
ATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATACCCCGGGC
ATGAATAAACTTTGCACTGA
back to top