FC932427

Overview
NameFC932427
Unique NameFC932427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15511 contig Ccv1_Contig15511:1..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +K+++G LSW T D SLR AF  FG++VD+ V+VDRETGRSRGFGFV F+        I+ ++ ++L+GR IRVN AN RP
Sbjct:   35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L W T D+SL+ AF ++G+++DS ++ DRETGRSRGFGFVTF+S       I A+N QDLDGR I VN A +R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +++YVGNLSW   D +L+  F E GN+VD+ V+ DR++GRSRGFGFVT+SS       I++LN  DLDGR IRV+ A  RP
Sbjct:  207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.549e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +++YVGNLSW   D +L+  F E GN+VD+ V+ DR++GRSRGFGFVT+SS       I++LN  DLDGR IRV+ A  RP
Sbjct:  208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T+DESL  AF +FG+I DS ++ DRETGRSRGFGFVTF         I  +N Q+LDGR I VN A +R
Sbjct:    7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.761e-17
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W TS+ESL  AF  +G I+DS V+ DRETGRSRGFGFVTFSS       I  +N ++LDGR I VN A +R
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.300e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +++YVGNLSW   D +L   F E G +V++ V+ DR++GRS+GFGFVT SS       IN+LN  DLDGR+IRV+ A ARP
Sbjct:  257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.300e-17
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T++E+L  AF  FG ++DS V+ DRETGRSRGFGFVTFSS       I  +N ++LDGR I VN A +R
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.125e-17
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T + SL  AF +FG +VDS ++ DRETGRSRGFGFVTF         I  +N QDLDGR I VN A +R
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.693e-17
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T D +L  AF ++G+++DS ++ DRETGRSRGFGFVTF         I  +N QDLDGR I VN A +R
Sbjct:    9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87          
The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GRP2_ARATH9.339e-1954.32Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
GRP_HORVU1.593e-1854.43Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
ROC2_NICSY2.717e-1854.3229 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL3.549e-1854.3231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP1_DAUCA1.349e-1754.43Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRPA_MAIZE1.761e-1755.70Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
ROC2_ARATH2.300e-1753.0929 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
GRP2_SORBI2.300e-1753.16Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP2_SINAL5.125e-1753.16Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP7_ARATH6.693e-1750.63Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34208E03EF PostHarveN Citrus clementina cDNA clone C34208E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bp
GATCACACCTCGTGACTCCCACTTTCTTTCAAATGTCCAAGATCTACGTC
GGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGG
TGAGTTCGGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTG
GTCGCTCCCGTGGATTCGGTTTCGTCACCTTCTCTTCCGCTGAGGAGGCC
GAGGCCGCCATCAACGCTCTCAACGAGCAGGACCTCGATGGTCGTCGCAT
CCGCGTCAACCTCGCCAACGCCCGCCCCGGCGGTGGCTTCGGGGGTGGTA
ACGGTGGTGCCGGTGGTGGCCGCTGGTAAACGTTGATCAGTGACCCGAAA
AAGTGCGCGATGGTTATGCAGAACGAGAAAAACGTGACATATTGACGCTT
AGCGTTGGTAACGGTGCTTTGTGTGCCCTGAGAAATCAGTCACAGCTCAC
AAGGCAGTTACTAGAGTTACTCAAGAAGTAGATAGTATTTTCCCTCGGTG
TTATACCTCAAGGACATTTGGAAATTTATTCAGGGCCGATCGATTCGTGC
ACTGATACACAAA
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