FC932429

Overview
NameFC932429
Unique NameFC932429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13000 contig Ccv1_Contig13000:171..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932429 vs. ExPASy Swiss-Prot
Match: SKI31_ARATH (F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.316e-51
Identity = 107/208 (51.44%), Postives = 135/208 (64.90%), Query Frame = 2 
Query:  101 MTLSDDEDESLAQFLESEVLAQVXXXXXXXXXXXXXXXXXXXLCVEKFXXXXXXXXXXXXXXXXXXXXXXXXEIHSSPNRIDTGIFSKIPPELFTHILKFLSSEDLVSCSLVCRFLNYAASDESLWRRLYCMRWGLLPPTNNLRVCAWKKLYIQRDKEDLAKLVRSCPTEFKEYYIQMQAAKRSQAPLPSQVKDDRIIIDKTVGGSVS 724
            M++SD+EDE  A+FLESEV +                       +EK                         +  +   RI++G+F+ +P ELF HILKFLSSEDLVSCSLVC+FLN+AA+DESLWRRLYC+RWGL  P+  LR  AWKKLYI RD++D+ +LVR+CP++FKEYY+ MQAAKRSQAPLPSQ+ DDRII+D TV   VS
Sbjct:    1 MSVSDEEDECFARFLESEVSSVEDKEETKEPEAKRQR-------IEK--------GETKALEKDEDQKENGNKDKTDAKRIESGVFTNVPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADESLWRRLYCIRWGLTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHMQAAKRSQAPLPSQMVDDRIILDNTVLEQVS 193
The following BLAST results are available for this feature:
BLAST of FC932429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI31_ARATH2.316e-5151.44F-box protein SKIP31 OS=Arabidopsis thaliana GN=SK... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34208E05EF PostHarveN Citrus clementina cDNA clone C34208E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932429 ID=FC932429; Name=FC932429; organism=Citrus clementina; type=EST; length=725bp
GGCTGTAATTTTCACCTCGTAAAATATTACAAAAACGGCCACAACCCTGC
CGCCGCCGTCCGATCCAAATCCAGATTCCGCTGCTCCTTTCGTCTCGACG
ATGACGTTATCCGACGACGAAGACGAAAGCTTGGCTCAGTTCCTGGAATC
CGAAGTCCTCGCTCAAGTTTCAGATTCCGAGGAAGAGAAGCAATCCAAGG
AAGAAGATGAACCGAAAAAGAAGAAATTGTGCGTGGAGAAATTCTCAGCC
ACGGGCTCGTGCTCGGGGTCGGGCTCGGATAGTATTAGTAACAATAATAA
TTTTAATAATAAAAGTGAGATTCATTCTAGTCCTAATAGAATTGATACTG
GAATTTTCAGCAAGATTCCGCCTGAATTGTTCACGCACATACTCAAATTC
CTGTCTTCTGAGGATCTTGTATCATGTTCGCTGGTTTGTAGATTCCTGAA
TTATGCTGCTTCTGATGAGTCCTTGTGGCGTCGCTTATACTGTATGCGAT
GGGGTCTGTTGCCCCCAACCAACAATTTACGAGTTTGTGCTTGGAAAAAG
CTTTATATTCAGCGCGATAAGGAAGACTTGGCCAAACTAGTTAGAAGTTG
CCCAACTGAGTTTAAAGAGTACTATATCCAGATGCAAGCTGCTAAGAGAA
GCCAAGCACCACTTCCTTCACAGGTGAAAGATGATCGGATCATTATTGAC
AAGACAGTTGGGGGATCAGTTTCTT
back to top