FC932434

Overview
NameFC932434
Unique NameFC932434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.833e-85
Identity = 154/174 (88.51%), Postives = 165/174 (94.83%), Query Frame = 2
Query:  125 MAGSWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            MAG+W+ R SL+V AIV FG LFA SI+KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD ERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF+DKEVQRD KL PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    1 MAGAWKRRASLIVFAIVLFGSLFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQRDKKLVPYEIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKD 174          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.621e-82
Identity = 149/172 (86.63%), Postives = 160/172 (93.02%), Query Frame = 2
Query:  131 GSWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            G+W  R SL+V  IV FG LFA SI+ EEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD ERLIGEAAKN AAVNP+RT+FDVKRLIGRKF+DKEVQRDMKL PYKIVN+DGKPYIQV+I+DGETK+FSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    4 GAWNRRTSLIVFGIVLFGCLFAFSIATEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNLAAVNPERTVFDVKRLIGRKFDDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKIFSPEEISAMILTKMKETAEAYLGKKIKD 175          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 1.942e-80
Identity = 151/174 (86.78%), Postives = 163/174 (93.68%), Query Frame = 2
Query:  125 MAGSWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            MA S+ A  S VVLAI+FFG LFA S +KEEATKLG+VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWV FTDSERLIGEAAKNQAAVNP+RT+FDVKRLIGRKFEDKEVQ+D KL PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    1 MARSFGAN-STVVLAIIFFGCLFAFSTAKEEATKLGSVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKD 173          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.259e-79
Identity = 150/174 (86.21%), Postives = 163/174 (93.68%), Query Frame = 2
Query:  125 MAGSWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            MA S+ A  S VVLAI+FFG LFA+S + EEATKLG+VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWV FTDSERLIGEAAKNQAAVNP+RT+FDVKRLIGRKFEDKEVQ+D KL PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    1 MARSFGAN-STVVLAIIFFGCLFALSSAIEEATKLGSVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKD 173          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.804e-79
Identity = 151/174 (86.78%), Postives = 159/174 (91.38%), Query Frame = 2
Query:  125 MAGSWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            MA   R   SLVVLAIV  G L A+S +KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD+ERLIGEAAKN AAVNP+RTIFDVKRLIGRKFEDKEVQRDMKL PYKIV++DGKPYIQV+I+DGE KVFSPEEISAMILTKMKETAEAFLGK IKD
Sbjct:    1 MAACSRRGNSLVVLAIVLLGCLSALSNAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDNERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVSKDGKPYIQVKIKDGEVKVFSPEEISAMILTKMKETAEAFLGKTIKD 174          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 291.197 bits (744), Expect = 3.100e-78
Identity = 143/169 (84.62%), Postives = 155/169 (91.72%), Query Frame = 2
Query:  140 RARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            RARGS  +L ++  G LFA S++KEE  KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF DKEVQRDMKL PYKI+N+DGKPYIQV+I+DGE KVFSPEEISAMIL KMK+TAEA+LGKKI D
Sbjct:    3 RARGSAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFADKEVQRDMKLVPYKIINKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKIND 171          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.049e-78
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 2
Query:  140 RARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            R RGS  +L ++  G LFA S++KEE  KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF+DKEVQRDMKL PYKI+N+DGKPYIQV+I+DGE KVFSPEEISAMIL KMK+TAEA+LGKKI D
Sbjct:    3 RVRGSAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFQDKEVQRDMKLVPYKIINKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKIND 171          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.009e-77
Identity = 142/174 (81.61%), Postives = 156/174 (89.66%), Query Frame = 2
Query:  125 MAGSWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            MA +W++R S +   IV  G LFA   +K+EA KLGTVIGIDLGTTYSCVGVYK+G VEIIANDQGNRITPSWVAFT+ ERLIGEAAKNQAA NP+RTIFDVKRLIGRKFEDKEVQ+DMKL PYKIVNRDGKPYIQV++++GETKVFSPEEISAMILTKMKETAE FLGKKIKD
Sbjct:    1 MAVAWKSRASSIAFGIVLLGSLFAFVSAKDEAPKLGTVIGIDLGTTYSCVGVYKDGKVEIIANDQGNRITPSWVAFTNDERLIGEAAKNQAAANPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNRDGKPYIQVKVQEGETKVFSPEEISAMILTKMKETAETFLGKKIKD 174          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.401e-54
Identity = 105/169 (62.13%), Postives = 129/169 (76.33%), Query Frame = 2
Query:  134 SWRARGSLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            SW    S++    + F   F       +   +GTVIGIDLGTTYSCVGV + G VEI+ NDQGNRITPS+VAFTD ERL+G+AAKNQAA NP RTIFD+KRLIGRKF DK+VQ D+K  PYK+V++D KP ++V+++ GE K F+PEEISAMIL KMKETAE +LGKK+
Sbjct:    7 SWALGLSILGFFALLFSAGFVQQAHANDTEAMGTVIGIDLGTTYSCVGVMQKGKVEILVNDQGNRITPSYVAFTDEERLVGDAAKNQAAANPHRTIFDIKRLIGRKFSDKDVQNDIKHFPYKVVSKDDKPVVKVEVK-GEEKTFTPEEISAMILGKMKETAEGYLGKKV 174          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.390e-54
Identity = 107/162 (66.05%), Postives = 132/162 (81.48%), Query Frame = 2
Query:  155 LVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            L +L ++ F    A    +EE    G+VIGIDLGTTYSCVGV+K G VEII NDQGNRITPS+VAFT++ERLIGEAAKNQA +NP+ TIFD+KRLIGR+F+D+EVQRDMKL PYKIV+++ KPY+ V+++ GE K +SPEEISAMIL +MKE AEA LGK +
Sbjct:    9 LCLLLLISFAA--AAEKKEEEKKDYGSVIGIDLGTTYSCVGVFKKGKVEIIPNDQGNRITPSYVAFTETERLIGEAAKNQATLNPENTIFDIKRLIGRRFDDEEVQRDMKLLPYKIVSKNNKPYVVVKVK-GEEKTYSPEEISAMILGRMKEIAEASLGKTV 167          
The following BLAST results are available for this feature:
BLAST of FC932434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP5_TOBAC5.833e-8588.51Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP4_TOBAC4.621e-8286.63Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP2_ARATH1.942e-8086.78Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH1.259e-7986.21Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP_SOLLC2.804e-7986.78Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP2_MAIZE3.100e-7884.62Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP3_MAIZE4.049e-7884.02Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP_SPIOL2.009e-7781.61Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
GRP78_NEUCR1.401e-5462.1378 kDa glucose-regulated protein homolog OS=Neuros... [more]
BIP2_DICDI2.390e-5466.05Luminal-binding protein 2 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC34208E10EF PostHarveN Citrus clementina cDNA clone C34208E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932434 ID=FC932434; Name=FC932434; organism=Citrus clementina; type=EST; length=648bp
GGACTGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACAT
CGAAACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAG
GGTATAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGG
GTCCCTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTT
CAATTTCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGAT
CTTGGTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGA
AATCATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCAT
TCACTGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCT
GTCAATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAA
GTTTGAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGA
TTGTGAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGC
GAGACCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAA
GATGAAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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