FC932435

Overview
NameFC932435
Unique NameFC932435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: PRP45_ASPFU (Pre-mRNA-processing protein 45 OS=Aspergillus fumigatus GN=prp45 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.639e-59
Identity = 132/229 (57.64%), Postives = 139/229 (60.70%), Query Frame = 2
Query:    2 EHLRMLAQKAREDRAGPXXXXXXXXXXXXXXXXXXXXXXXXXXTPSXXXXXXXXXXXXXXXXXXXXXXXXXXSRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSESMWDSRLFNQTSGMQSGFNEDNPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMSKLEKTKRFEVLXXXXXXXXXXXXXXXXXXPVQFEKDTADPFGIDNMIADVT--SGQKRYGIQE 682
            EHLR LAQKARE+RA                            TPS                          SRMGTERRIQ MAREQNRDISEKVALGLAKPTQ+SESMWDSRLFNQTSG+QSGFNEDNPYDKPLFAAQDAINSIYRPRAQ            MSK++KT RFEVL                  PVQFEKDT DPFGID+MIADVT  +GQKRYGIQE
Sbjct:  336 EHLRALAQKAREERAASNRRDSRARSHTRSASRSPSAYSRSA-TPSDDEEAARERERIRRERRQDAERQLRQSRMGTERRIQMMAREQNRDISEKVALGLAKPTQTSESMWDSRLFNQTSGLQSGFNEDNPYDKPLFAAQDAINSIYRPRAQLDVDDEEGAEGEMSKIQKTNRFEVLGKAKEGFRGAAEAEARDGPVQFEKDTTDPFGIDSMIADVTGGAGQKRYGIQE 563          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: PRP45_EMENI (Pre-mRNA-processing protein 45 OS=Emericella nidulans GN=prp45 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.927e-58
Identity = 128/232 (55.17%), Postives = 139/232 (59.91%), Query Frame = 2
Query:    2 EHLRMLAQKAREDRAGPXXXXXXXXXXXXXXXXXXXXXXXXXXTPSXXXXXXXXXXXXXXXXXXXXXXXXXXSRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSESMWDSRLFNQTSGMQSGFNEDNPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMSKLEKTKRFEVLXXXXXXXXXXXXXXXXXXPVQFEKDTADPFGIDNMIADVT-----SGQKRYGIQE 682
            EHLR LAQKARE+R+                            TPS                          SRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSE+MWDSRLFNQTSG+ +GFNEDNPYDKPLFAAQDAINSIYRP+ Q            MSK++K+ RFEVL                  PVQFEKDTADPFGID+MIADVT     +GQKRYGIQE
Sbjct:  335 EHLRALAQKAREERSRAQSRASHSPSRGRSRSRSYSDASSRSRTPSEDEEAARERERIRRERRQDAERQLRQSRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSETMWDSRLFNQTSGLSTGFNEDNPYDKPLFAAQDAINSIYRPKPQADFDDEADAEGEMSKIQKSNRFEVLGRAKEGFRGAADAEERSGPVQFEKDTADPFGIDSMIADVTGGAGGAGQKRYGIQE 566          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: PRP45_USTMA (Pre-mRNA-processing protein 45 OS=Ustilago maydis GN=PRP45 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 68/169 (40.24%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  218 SRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSESMWDSRLFNQTSGMQSGFNED---NPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMSKLEK-----------TKRFEVLXXXXXXXXXXXXXXXXXXPVQFEKDTADPFGIDNMIADVTSGQKRYGIQE 682
            S MG E+R + + REQNRDISEKVALGLAKPT S ESM DSRLFNQ   + +G+ ++   N YDKPLF+   A  +IYR  A              + LE+             +F  +                  PVQFEKDT+DPF I+  + D   G KR   Q+
Sbjct:  456 SNMGIEQRTKQLLREQNRDISEKVALGLAKPTASKESMTDSRLFNQGESLAAGYGDEDSYNLYDKPLFSGSSAAAAIYRRPAARGGANDIYSGADDTALEEELGKNDRFGLGQSKFRGVQGDADRDSGSGSAPVRSGPVQFEKDTSDPFAINQFLEDAKRGIKRTSDQD 624          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: PRP45_YARLI (Pre-mRNA-processing protein 45 OS=Yarrowia lipolytica GN=PRP45 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2
Query:  218 SRMGTERRIQAMAREQNRDISEKVALGLAKPTQ-SSESMWDSRLFNQTSGMQSGFNEDNPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMSKLEKTKRFEVL 532
            S+MGT+++I+ +A+E +RDISE+VALG A+P + + E+ +DSRLF+++  +Q GFNED  YDK LF+AQ+A+ SIYRP A             + +LE  KRF+VL
Sbjct:  441 SKMGTQQKIKQLAKENSRDISERVALGAAQPQKLAGEAQFDSRLFSKSGSLQRGFNEDQYYDKSLFSAQEAVQSIYRPSAS----GDSVAEDTIDRLETEKRFDVL 542          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: PRP45_SCHPO (Pre-mRNA-processing protein 45 OS=Schizosaccharomyces pombe GN=prp45 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 2
Query:  218 SRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSESMWDSRLFNQTSGMQSGFNED---NPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMSKLEKTKRFEVL-XXXXXXXXXXXXXXXXXXPVQFEKDTADPFGIDNMIADVTS 655
            SRMG E+R +   +++ RD++E+VALGL+KP+ SS++M DSRLFNQ SG+ SGF ++   N YDKP  AA    +++YRP A             + ++    R++VL                   PV FEKD ADPFG+D  + +V+S
Sbjct:  409 SRMGAEKRAKLAEKDRPRDVAERVALGLSKPSMSSDTMIDSRLFNQASGLGSGFQDEDSYNVYDKPWRAAPS--STLYRPGA--TLSRQVDASAELERITSESRYDVLGNAHKKFKGSDEVVESRAGPVTFEKDIADPFGVDTFLNNVSS 554          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: PRP45_CRYNE (Pre-mRNA-processing protein 45 OS=Cryptococcus neoformans GN=PRP45 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 66/161 (40.99%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  218 SRMGTERRIQAMAREQNRDISEKVALGLAKPTQSSESMWDSRLFNQTSGMQSGF-NED--NPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMS-KLEKTKRFEVLXXXXXXXXXXXXXXXXXXPVQFEKDT-------ADPFGIDNMIADVTSGQKR 667
            S MG+E R + +A+E NRDISEK+ALGLAKP+ S E++ DSRLFN+   + +GF +ED  N YDKPLFA   A  +IYRP                  K E +K    L                  PVQFEKDT       ADPFG++  +     G KR
Sbjct:  419 SNMGSEMRAKMLAKEANRDISEKIALGLAKPSASKETLLDSRLFNR-EALSTGFASEDSYNLYDKPLFAGSSAAAAIYRPAGSSRNDESFGGGTEEGIKEEMSKDRFQLGNATRGFEGAEGVEAREGPVQFEKDTIVALDGSADPFGVEQFMDAARRGGKR 578          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: BX42_DROME (Puff-specific protein Bx42 OS=Drosophila melanogaster GN=Bx42 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  221 RMGTERRIQAMAREQNRDISEKVALGL-AKPTQSSESMWDSRLFNQTSGMQSGFNED---NPYDKPLFAAQDAINSIYRPRAQXXXXXXXXXXXXMSKLEKTKRFEVLXXXXXXXXXXXXXXXXXXPVQFEKDTADPFGIDNMIADVTSGQKR 667
            R   E+R + + +E+ RDISE++ALGL AK   + E+++D RLFN T GM SG+ +D   N YDKP   +      IYRP  Q            +  +  TKRF V                   PV+FEK+  DPFG+D  +       KR
Sbjct:  381 RAAPEKRSK-LQKERERDISEQIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSNTLGAHIYRPSKQ---ADSDNYGGDLDAIVNTKRF-VPDKQFSGASKEAAAGQRSGPVEFEKE-EDPFGLDQFLNMAKKAPKR 527          
BLAST of FC932435 vs. ExPASy Swiss-Prot
Match: SNWA_DICDI (Protein snwA OS=Dictyostelium discoideum GN=snwA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  257 REQNRDISEKVALGLAKPTQSSESMWDSRLFNQTSGMQSGFNED---NPYDKPLFAAQDAINSIYRPRA 454
            R+Q+RDISEK+ALG A   ++ +S++D RLFNQ+  + SGF  D   N Y KPLF      NSIYRP++
Sbjct:  548 RDQDRDISEKIALGQASIKRTEDSIYDQRLFNQSESLTSGFGNDDSYNVYSKPLFGGA-VSNSIYRPKS 615          
The following BLAST results are available for this feature:
BLAST of FC932435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PRP45_ASPFU4.639e-5957.64Pre-mRNA-processing protein 45 OS=Aspergillus fumi... [more]
PRP45_EMENI3.927e-5855.17Pre-mRNA-processing protein 45 OS=Emericella nidul... [more]
PRP45_USTMA1.841e-2340.24Pre-mRNA-processing protein 45 OS=Ustilago maydis ... [more]
PRP45_YARLI2.489e-2048.11Pre-mRNA-processing protein 45 OS=Yarrowia lipolyt... [more]
PRP45_SCHPO2.489e-2039.33Pre-mRNA-processing protein 45 OS=Schizosaccharomy... [more]
PRP45_CRYNE2.751e-1940.99Pre-mRNA-processing protein 45 OS=Cryptococcus neo... [more]
BX42_DROME2.494e-1235.29Puff-specific protein Bx42 OS=Drosophila melanogas... [more]
SNWA_DICDI6.144e-1150.72Protein snwA OS=Dictyostelium discoideum GN=snwA P... [more]
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Properties
Property NameValue
Genbank descriptionC34208E11EF PostHarveN Citrus clementina cDNA clone C34208E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932435 ID=FC932435; Name=FC932435; organism=Citrus clementina; type=EST; length=684bp
GGAGCATCTTCGGATGTTGGCACAAAAGGCTCGCGAGGACCGCGCAGGCC
CCAGCGCTCGCGTTTCACGGGCTCGCTCCCGTTCCCGAAGTGTTAGCCGC
AGTGTATCTGTGTACTCCTCCAGGTCTGCTACCCCCAGCGAAGATGACGA
AGCTGCCCGAGACCGTGCGGAGCAGCGCCGCGAGCGACGGCGTGAAGATG
AACGACAGCTGCGCCAGTCTCGCATGGGGACAGAGCGCCGCATTCAGGCC
ATGGCCCGAGAACAGAACCGTGATATCTCCGAGAAGGTCGCGCTTGGTCT
GGCCAAGCCCACACAGAGCTCTGAATCTATGTGGGATTCTCGTTTGTTCA
ACCAGACCAGCGGTATGCAATCTGGTTTCAATGAAGATAACCCCTACGAC
AAGCCGCTGTTCGCCGCGCAGGACGCCATCAACAGCATTTATCGCCCACG
TGCCCAGGCTGATGCGGATGACGAAGATGCAGGCGAAGGTGAGATGAGCA
AGCTTGAAAAAACGAAGCGGTTCGAGGTCCTGGGTCGCGCCAAGGAGGGA
TTCCGTGGCGCTGCTGAAGCCGAGGAGCGTCAAGGTCCTGTTCAATTTGA
GAAGGACACTGCTGATCCATTTGGCATTGATAACATGATTGCCGATGTAA
CCTCTGGGCAGAAGCGTTATGGAATCCAGGAAGC
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