FC932436

Overview
NameFC932436
Unique NameFC932436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932436_ssr101 microsatellite FC932436_ssr101:101..110. BLAST: Citrus ESTs to SwissProt
Homology
[Close]
BLAST of FC932436 vs. ExPASy Swiss-Prot
Match: Y3023_ACIAD (Uncharacterized protein ACIAD3023 OS=Acinetobacter sp. (strain ADP1) GN=ACIAD3023 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:  235 YSTAARASGAGRNGKTELVHAGAGSVSSVKLAMPKELGGQGDGNNPEQLFALGYSACFLSAVQLYGRTNKLSVPDDLAITTEVTIAKDETSFGLAVQIKGXXXXXXXXXXXXXXXXXHQVCP 600
            Y+  A+A+G GR+G+       + ++  V+L +PKE+GG G G NPEQLFA GYSACFL A++     +K ++P D  +  +V I      FG+ V++                   H VCP
Sbjct:    8 YTAHAKATG-GRDGRA----TSSDNILDVQLTVPKEMGGMGGGTNPEQLFAAGYSACFLGAMKFVATRDKFNIPKDAYVEGDVGIGPIPNGFGIEVKLHVHLPGMDTDEAKKLVDAAHIVCP 124
[Close]
BLAST of FC932436 vs. ExPASy Swiss-Prot
Match: OHR_XANCH (Organic hydroperoxide resistance protein OS=Xanthomonas campestris pv. phaseoli GN=ohr PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:  235 YSTAARASGAGRNGKTELVHAGAGSVSSVKLAMPKELGGQG-DGNNPEQLFALGYSACFLSAVQLYGRTNKLSVPDDLAITTEVTIAKDETSFGLAVQIKGXXXXXXXXXXXXXXXXXHQVCP 600
            Y+  A A+G GR G+       +      KL+ P+ELGG G DG NPEQLFA GY+ACF+ A++     +KL +P +++I + V I +    FG+ V+++                  HQVCP
Sbjct:    9 YTAHATATG-GREGRA----VSSDKALDAKLSTPRELGGAGGDGTNPEQLFAAGYAACFIGAMKAVAAQDKLKLPGEVSIDSSVGIGQIPGGFGIVVELRIAVPGMDKAELQTLVDKAHQVCP 126
[Close]
BLAST of FC932436 vs. ExPASy Swiss-Prot
Match: OHR_XANAC (Organic hydroperoxide resistance protein OS=Xanthomonas axonopodis pv. citri GN=ohr PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:  235 YSTAARASGAGRNGKTELVHAGAGSVSSVKLAMPKELGGQG-DGNNPEQLFALGYSACFLSAVQLYGRTNKLSVPDDLAITTEVTIAKDETSFGLAVQIKGXXXXXXXXXXXXXXXXXHQVCP 600
            Y+  A A+G GR G+       +      KL+ P+ELGG G DG NPEQLFA GY+ACF+ A++     +KL +P +++I + V I +    FG+ V+++                  HQVCP
Sbjct:    9 YTAHATATG-GREGRA----VSSDKALDAKLSTPRELGGAGGDGTNPEQLFAAGYAACFIGAMKAVAAQDKLKLPGEVSIDSSVGIGQIPGGFGIVVELRIAVPGMDKAELQTLVDKAHQVCP 126
The following BLAST results are available for this feature:
BLAST of FC932436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3023_ACIAD1.576e-1435.25Uncharacterized protein ACIAD3023 OS=Acinetobacter... [more]
OHR_XANCH7.822e-1435.77Organic hydroperoxide resistance protein OS=Xantho... [more]
OHR_XANAC7.822e-1435.77Organic hydroperoxide resistance protein OS=Xantho... [more]
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Properties
Property NameValue
Genbank descriptionC34208E12EF PostHarveN Citrus clementina cDNA clone C34208E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932436 ID=FC932436; Name=FC932436; organism=Citrus clementina; type=EST; length=685bp
GCACCACAATCCCCTCGAAGGTCAATAGATAATTGCACGTTGAGCATCTC
CCTGTTCCAGCGCAGCGCCTCTTTTTTGATCAGACACATCATCATGTCTT
TCTCTCTCTCCCTGCGCCTGCTGAGCCGCCCCGCTGCTCTCGCGTCCCCA
CGCGCAAGCATGGCCAATGGCCCTGTCAGCTTGGGTGCAGGCCTGCGCAC
CTTCGCCTCCACCTCTCCAGCGCTGGAGCCCAAGTACTCCACCGCTGCCA
GGGCGAGCGGAGCTGGCAGAAACGGAAAGACGGAGCTCGTGCATGCTGGT
GCGGGAAGCGTGTCCAGCGTCAAGCTAGCCATGCCCAAGGAGCTGGGCGG
GCAGGGCGACGGAAACAATCCAGAACAGCTCTTCGCTTTGGGCTACTCGG
CTTGCTTCCTCTCCGCCGTGCAGCTGTACGGTCGCACCAACAAGCTCAGC
GTGCCTGATGATCTGGCCATCACTACCGAGGTGACCATCGCCAAGGACGA
AACCAGCTTTGGCCTCGCCGTCCAGATCAAGGGCAAGAGCGACAAAGCCG
ACAAGGCGGAGCTGAAGAAGCTCCTCGACGGCGCACACCAAGTTTGCCCG
TGAGTGAAGTGCAAGTTGCAGGACTTGGCAAGCGGGCCTCGCGTGGTGCC
GTTGTCATATTCGTGTCAAAGGGCTTGCCCGAATG
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