FC932437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.243e-42 Identity = 98/163 (60.12%), Postives = 107/163 (65.64%), Query Frame = 2 Query: 239 SSPSRFVRNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 S SRF RNVA++SEF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GRPLRVN NRVY GNLSWG D Sbjct: 54 SPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVD 216 HSP 2 Score: 72.4034 bits (176), Expect = 2.538e-12 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 2 Query: 320 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 GS +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A + +G +L+GR +RV+ Sbjct: 197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 1.993e-41 Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 2 Query: 245 PSRFVRNVAVSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 PSRFVRNVAVSS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGYE EGRPLRVN Sbjct: 60 PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173 HSP 2 Score: 78.1814 bits (191), Expect = 4.626e-14 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 320 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 GS +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A NG +L+GR +RV+ Sbjct: 250 GSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40 Identity = 94/151 (62.25%), Postives = 102/151 (67.55%), Query Frame = 2 Query: 248 SRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 SRFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN NRVY GNL+WG D Sbjct: 53 SRFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 200 HSP 2 Score: 77.0258 bits (188), Expect = 1.030e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 320 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 181 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37 Identity = 94/161 (58.39%), Postives = 103/161 (63.98%), Query Frame = 2 Query: 236 PSS--PSRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 PSS SRFVR V + +FDQ ED+ ++G NFSPDLK+FVGNL FS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN NRVY GNL+WG D Sbjct: 47 PSSCFSSRFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206 HSP 2 Score: 77.0258 bits (188), Expect = 1.030e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 320 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 187 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35 Identity = 89/164 (54.27%), Postives = 97/164 (59.15%), Query Frame = 2 Query: 248 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 S F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN NRVY GNLSWG D Sbjct: 57 SSFSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVD 219 HSP 2 Score: 76.2554 bits (186), Expect = 1.758e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 320 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.359e-34 Identity = 87/164 (53.05%), Postives = 98/164 (59.76%), Query Frame = 2 Query: 248 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 S F VA+S +FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN NRVY GNLSWG D Sbjct: 58 SSFSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVD 220 HSP 2 Score: 77.0258 bits (188), Expect = 1.030e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 320 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.027e-22 Identity = 60/128 (46.88%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 314 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A + NGY+++GR L VN RVY GNL W D Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC---------RVYVGNLPWDVD 161 HSP 2 Score: 81.6481 bits (200), Expect = 4.184e-15 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 326 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 +F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS EV A +G L+GR +RVN Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVN 223
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21 Identity = 62/145 (42.76%), Postives = 78/145 (53.79%), Query Frame = 2 Query: 254 FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 FV V + E D+ E +E+ D KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN R+Y GN+ WG D Sbjct: 107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSY---------RIYVGNIPWGID 242 HSP 2 Score: 80.1073 bits (196), Expect = 1.217e-14 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 2 Query: 329 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+ A +G L+GR +RVN Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVN 304
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19 Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 2 Query: 248 SRFVRNVAVSSEFDQEEDLLSDEDGSNF----------------SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 ++F V+V SE D L E G +F S D KLFVGNLP+ +DS LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN Sbjct: 50 TQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN 171 HSP 2 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 329 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+ A +G L+GR +RVN Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19 Identity = 61/138 (44.20%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 278 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSWGGD 688 SE D E +S+ + S + KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN RVY GNL W D Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF---------RVYVGNLPWDVD 256 HSP 2 Score: 85.5001 bits (210), Expect = 2.897e-16 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 329 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565 + P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+ A +G LEGR +RVN Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318 The following BLAST results are available for this feature:
BLAST of FC932437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932437 ID=FC932437; Name=FC932437; organism=Citrus clementina; type=EST; length=688bpback to top |