FC932446

Overview
NameFC932446
Unique NameFC932446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932446 vs. ExPASy Swiss-Prot
Match: EBP2_ARATH (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.236e-39
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  196 KLAEPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDIDQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAGMVKSDAHMEKVKRRLLSEQ 516
            KLAEP+K A+YNRDGL +KLQDISWPE+  W HKLT++IDQ   VDVNDDL RE +FYTQALEGTR+AF KL  MG+ FLRPA+YYA MVKSD HMEKVK RLL E+
Sbjct:   41 KLAEPTKTAIYNRDGLLDKLQDISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLLHEK 147          
BLAST of FC932446 vs. ExPASy Swiss-Prot
Match: EBP2_CAEEL (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans GN=C18A3.3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  214 KQAVYNRDG-LEEKLQDISWPENAGWIHKLTIDIDQEQEVDV---NDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAGMVKSDAHMEKVKRRLLSEQ 516
            K+ + N+   ++EKL +I+  ++  W+  L + +    E+D    NDD +RE +FY QA +  + A+ +L ++G+  LRP DYYA M KSD HM+KV++RLL  Q
Sbjct:   82 KRPIINKSAEMKEKLAEIT--KDLPWVETLEV-VTPHSEMDKKVENDDFQRELNFYKQAEKAVQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQ 183          
BLAST of FC932446 vs. ExPASy Swiss-Prot
Match: EBP2_SCHPO (Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe GN=ebp2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  199 LAEPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDIDQEQEVD-VNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAGMVKSDAHMEKVKRRLLSE 513
            L    K A+ N   LE   + I +P++  ++    +   +   ++ V DDL RE +FY Q +   + AF KL+   +   RP DY+A M+KSD HMEKV++ L+ E
Sbjct:   86 LIRKRKLAINNTVALENIYERIKYPDDISFVENQAVTTKEPIIIENVEDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKE 191          
BLAST of FC932446 vs. ExPASy Swiss-Prot
Match: EBP2_YEAST (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae GN=EBP2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 36/104 (34.62%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  214 KQAVYNRDGLEEKLQDIS--WPENAGWIHK-LTIDIDQEQEV-DVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAGMVKSDAHMEKVKRRLLSE 513
            K  V N   ++  L+ +   W +++   H+ +T + + ++ + D+ DD +RE +FY Q+L+    A ++L+ + +PF RP DY+A MVKSD HM+K+K +L+ E
Sbjct:  192 KLTVNNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEE 295          
The following BLAST results are available for this feature:
BLAST of FC932446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
EBP2_ARATH1.236e-3972.90Probable rRNA-processing protein EBP2 homolog OS=A... [more]
EBP2_CAEEL4.427e-1339.05Probable rRNA-processing protein EBP2 homolog OS=C... [more]
EBP2_SCHPO8.349e-1234.91Probable rRNA-processing protein ebp2 OS=Schizosac... [more]
EBP2_YEAST2.429e-1134.62rRNA-processing protein EBP2 OS=Saccharomyces cere... [more]
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Properties
Property NameValue
Genbank descriptionC34208F10EF PostHarveN Citrus clementina cDNA clone C34208F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932446 ID=FC932446; Name=FC932446; organism=Citrus clementina; type=EST; length=637bp
GAAAGTTTAGCTAGGGTTTTGCAGAGGTTTTGTTTTCAGTCTTCAGGAGC
CGCATCAAAAAGGTTTGTTATAATGGGGCTTGCTCGTAAAGAATCAACCT
TTTCTGATGAGGATGGATTTGAAGATGAAGATGTGAGTGAGCTCAATGAG
GAAGTTTCTGAATCTGAATCAGATTCAGAAGGGGAGGAAGATGTGAAATT
GGCCGAGCCTTCAAAACAGGCCGTGTACAACAGAGATGGTCTTGAGGAGA
AACTTCAAGATATTAGTTGGCCGGAAAATGCTGGGTGGATACATAAGCTT
ACCATTGATATTGATCAAGAGCAAGAGGTGGATGTGAATGATGATCTGAA
AAGGGAGGCTTCTTTCTATACACAGGCATTAGAGGGGACAAGGCAGGCCT
TTGAGAAGCTTCAATCGATGGGGCTGCCTTTTCTTAGACCGGCTGATTAT
TATGCAGGGATGGTTAAGTCGGATGCTCACATGGAAAAGGTGAAGCGCCG
ACTTTTGTCTGAGCAGAAAGAGATTGAGGAGGCTGCGGAGAGAAAGAAGG
CTAGAGAGGCTAAGAAACTAGCTAAAGAGATTCAGGTCCAAAAGACAAAG
GAGAGAGCGAAACAAANAAAAAAAAAAAAAAAAAAAA
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