FC932447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_SCHPO (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe GN=taf6 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 7.916e-44 Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 2 Query: 287 PLRFRRAI---GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAA---PSNGTNN----------EQKDGLP----VEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNI 733 PL F A G L+YLDD++V+F+ +I APLP+ P + S HWLAIEGVQP IP+N S GT+ E ++G+ VEIK V+H+LS+ELQLYF++IT + ++ L AL SL D GLH L+PYF F++D V+R L N+ Sbjct: 83 PLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITSALLDETNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNLGNL 251 HSP 2 Score: 74.3294 bits (181), Expect = 7.916e-44 Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 1 Query: 64 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273 E+++ +A+ +GI N + + A A+A D+EYRI +++QEA K M HS+RT LT+ D+ AL+ VEP+YGF Sbjct: 9 ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSALRTLNVEPLYGF 78
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_YEAST (Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae GN=TAF6 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.673e-41 Identity = 63/181 (34.81%), Postives = 99/181 (54.70%), Query Frame = 2 Query: 311 GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPEN----------------------------APVQAIAAPSNGTN-------NEQKDGLPVEIKLPVKHILSRELQLYFDKI--TELAVSRSDSV---LFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNI 733 G + ++YLD+++V+F +I PLP+ P + HWLA+EGVQP I +N PV + A ++ T+ + K G E+K VKH+LS+ELQ+YF+K+ T A S++D + + AL SL TDSGLH LVPYF F+A+++++ L+++ Sbjct: 103 GGQSVYYLDEEEVDFDRLINEPLPQVPRLPTFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDNSLQTPVTSTTASASVTDTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQHMKQAALTSLRTDSGLHQLVPYFIQFIAEQITQNLSDL 283 HSP 2 Score: 85.8853 bits (211), Expect = 2.673e-41 Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 1 Query: 58 PKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFASG 282 P++TV+ +A+S+G+ N + D ALA DVEYRI EI+++A+K RHS+R LTTDDV +AL++ VEP+YG+ G Sbjct: 13 PQDTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTDDVSKALRVLNVEPLYGYYDG 87
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_RAT (Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.185e-37 Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 2 Query: 287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712 P RF G R+L++ ++K+V+ D+I PLPR PLD + HWL+IEG QP IPEN P +A AA ++G E+K +G P +K H LS E QLY+ +ITE V ++ +AL S+ATD GL+ ++P F+ F+++ V Sbjct: 93 PFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 267 HSP 2 Score: 78.1814 bits (191), Expect = 6.185e-37 Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 34 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273 EE+K+ +++P E+++V+A+S+GI+ + L +V YRI+EI Q+A+K M +R LTT D+D ALKL+ VEP+YGF Sbjct: 3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_MOUSE (Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.185e-37 Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 2 Query: 287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712 P RF G R+L++ ++K+V+ D+I PLPR PLD + HWL+IEG QP IPEN P +A AA ++G E+K +G P +K H LS E QLY+ +ITE V ++ +AL S+ATD GL+ ++P F+ F+++ V Sbjct: 93 PFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 267 HSP 2 Score: 78.1814 bits (191), Expect = 6.185e-37 Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 34 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273 EE+K+ +++P E+++V+A+S+GI+ + L +V YRI+EI Q+A+K M +R LTT D+D ALKL+ VEP+YGF Sbjct: 3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_XENLA (Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 8.065e-37 Identity = 63/172 (36.63%), Postives = 91/172 (52.91%), Query Frame = 2 Query: 290 LRFRRAIGY-RDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-------------VQAIAAP-------------SNGTNNEQK----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712 L FR A G R+L + ++K+ + D+I PLPR PLD S+ HWL+IEGVQP IPEN P +A P G E+K +G P+++K H LS E QLY+ +ITE V ++ +AL S+ATD GL+ ++P F+ F+++ V Sbjct: 90 LPFRYASGGGRELHFYEEKETDLSDIISTPLPRVPLDVSLKAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQEEGLPGKGQGSGEGKGKEKKTAILEGAPLKLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 260 HSP 2 Score: 77.411 bits (189), Expect = 8.065e-37 Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 1 Query: 49 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273 +++P E+++VI++S+GIS S + LA +V +RI+E+ Q+A+K M +R LT D+D ALKL+ VEP+YGF Sbjct: 10 TLLPSESMKVISESVGISQMSEETCQLLAQEVSFRIKEVTQDALKFMHVGKRQKLTPSDIDAALKLKNVEPIYGF 84
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_HUMAN (Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.050e-36 Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 2 Query: 287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712 P RF G R+L++ ++K+V+ D+I PLPR PLD + HWL+IEG QP IPEN P +A A ++G E+K +G P+ +K H LS E QLY+ +ITE V ++ +AL S+ATD GL+ ++P F+ F+++ V Sbjct: 93 PFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 267 HSP 2 Score: 78.1814 bits (191), Expect = 1.050e-36 Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 34 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273 EE+K+ +++P E+++V+A+S+GI+ + L +V YRI+EI Q+A+K M +R LTT D+D ALKL+ VEP+YGF Sbjct: 3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_DROME (Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 6.942e-32 Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 2 Query: 287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-----------------------VQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712 P RF G R+L + +DK+++ ++ + PLD ++ HW +EGVQP +PEN P A P+ G ++ K+ + +K H LS E QLY+ +ITE V SD +AL SL +D GLH ++P F+A+ V Sbjct: 100 PFRFASG-GGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHVKQLATHELSVEQQLYYKEITEACVG-SDEPRRGEALQSLGSDPGLHEMLPRMCTFIAEGV 262 HSP 2 Score: 74.7146 bits (182), Expect = 6.942e-32 Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 49 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFAS 279 S + E+++VIA+SIG+ + S DAA LA DV +++ I+Q+A K M H++R L+ D+D +LK+R VEP YGF + Sbjct: 19 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVA 95
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6L_MOUSE (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.006e-15 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 34 EEEKMSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFAS 279 EE + +P+E+V ++A+S G+ S + A LA DV YR+RE Q + + M+H++R LT +D + AL+ +VE V G+ S Sbjct: 5 EERRFVEIPRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGS 85 HSP 2 Score: 40.817 bits (94), Expect = 2.006e-15 Identity = 31/129 (24.03%), Postives = 60/129 (46.51%), Query Frame = 2 Query: 320 DLFYLDDKDVEFKDVIEAP-LPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVA 703 DL++ +D++V ++ A +P+ +T++ H ++G + P+ + A+++ L+ +L Y+ ++T AV D L K AL L T+S + L+PYF Y V+ Sbjct: 98 DLYFPEDREVSLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS------------------------LTDDLLKYYQQVTR-AVLGDDPQLMKVALQDLQTNSKIAALLPYFVYVVS 201
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6L_HUMAN (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 7.430e-15 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 34 EEEKMSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFAS 279 EE + +P+E+V ++A+S G+ S + A LA DV YR+RE Q + + M+H++R LT +D + AL+ +VE V G+ S Sbjct: 5 EERRFVEIPRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGS 85 HSP 2 Score: 38.891 bits (89), Expect = 7.430e-15 Identity = 30/129 (23.26%), Postives = 60/129 (46.51%), Query Frame = 2 Query: 320 DLFYLDDKDVEFKDVIEAP-LPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVA 703 +L++ +D++V ++ A +P+ +T++ H ++G + P+ + A+++ L+ +L Y+ ++T AV D L K AL L T+S + L+PYF Y V+ Sbjct: 98 ELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS------------------------LTDDLLKYYHQVTR-AVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVS 201 The following BLAST results are available for this feature:
BLAST of FC932447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932447 ID=FC932447; Name=FC932447; organism=Citrus clementina; type=EST; length=734bpback to top |