FC932447

Overview
NameFC932447
Unique NameFC932447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9423 contig Ccv1_Contig9423:75..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_SCHPO (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe GN=taf6 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.916e-44
Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  287 PLRFRRAI---GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAA---PSNGTNN----------EQKDGLP----VEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNI 733
            PL F  A    G   L+YLDD++V+F+ +I APLP+ P + S   HWLAIEGVQP IP+N            S GT+           E ++G+     VEIK  V+H+LS+ELQLYF++IT   +  ++  L   AL SL  D GLH L+PYF  F++D V+R L N+
Sbjct:   83 PLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITSALLDETNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNLGNL 251          

HSP 2 Score: 74.3294 bits (181), Expect = 7.916e-44
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   64 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273
            E+++ +A+ +GI N + + A A+A D+EYRI +++QEA K M HS+RT LT+ D+  AL+   VEP+YGF
Sbjct:    9 ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSALRTLNVEPLYGF 78          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_YEAST (Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae GN=TAF6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.673e-41
Identity = 63/181 (34.81%), Postives = 99/181 (54.70%), Query Frame = 2
Query:  311 GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPEN----------------------------APVQAIAAPSNGTN-------NEQKDGLPVEIKLPVKHILSRELQLYFDKI--TELAVSRSDSV---LFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNI 733
            G + ++YLD+++V+F  +I  PLP+ P   +   HWLA+EGVQP I +N                             PV +  A ++ T+       +  K G   E+K  VKH+LS+ELQ+YF+K+  T  A S++D     + + AL SL TDSGLH LVPYF  F+A+++++ L+++
Sbjct:  103 GGQSVYYLDEEEVDFDRLINEPLPQVPRLPTFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDNSLQTPVTSTTASASVTDTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQHMKQAALTSLRTDSGLHQLVPYFIQFIAEQITQNLSDL 283          

HSP 2 Score: 85.8853 bits (211), Expect = 2.673e-41
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   58 PKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFASG 282
            P++TV+ +A+S+G+ N + D   ALA DVEYRI EI+++A+K  RHS+R  LTTDDV +AL++  VEP+YG+  G
Sbjct:   13 PQDTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTDDVSKALRVLNVEPLYGYYDG 87          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_RAT (Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.185e-37
Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712
            P RF    G R+L++ ++K+V+  D+I  PLPR PLD  +  HWL+IEG QP IPEN P         +A                       AA ++G   E+K     +G P  +K    H LS E QLY+ +ITE  V   ++    +AL S+ATD GL+ ++P F+ F+++ V
Sbjct:   93 PFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 267          

HSP 2 Score: 78.1814 bits (191), Expect = 6.185e-37
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   34 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273
            EE+K+    +++P E+++V+A+S+GI+    +    L  +V YRI+EI Q+A+K M   +R  LTT D+D ALKL+ VEP+YGF
Sbjct:    3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_MOUSE (Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.185e-37
Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712
            P RF    G R+L++ ++K+V+  D+I  PLPR PLD  +  HWL+IEG QP IPEN P         +A                       AA ++G   E+K     +G P  +K    H LS E QLY+ +ITE  V   ++    +AL S+ATD GL+ ++P F+ F+++ V
Sbjct:   93 PFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 267          

HSP 2 Score: 78.1814 bits (191), Expect = 6.185e-37
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   34 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273
            EE+K+    +++P E+++V+A+S+GI+    +    L  +V YRI+EI Q+A+K M   +R  LTT D+D ALKL+ VEP+YGF
Sbjct:    3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_XENLA (Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 8.065e-37
Identity = 63/172 (36.63%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  290 LRFRRAIGY-RDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-------------VQAIAAP-------------SNGTNNEQK----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712
            L FR A G  R+L + ++K+ +  D+I  PLPR PLD S+  HWL+IEGVQP IPEN P                +A P               G   E+K    +G P+++K    H LS E QLY+ +ITE  V   ++    +AL S+ATD GL+ ++P F+ F+++ V
Sbjct:   90 LPFRYASGGGRELHFYEEKETDLSDIISTPLPRVPLDVSLKAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQEEGLPGKGQGSGEGKGKEKKTAILEGAPLKLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 260          

HSP 2 Score: 77.411 bits (189), Expect = 8.065e-37
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   49 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273
            +++P E+++VI++S+GIS  S +    LA +V +RI+E+ Q+A+K M   +R  LT  D+D ALKL+ VEP+YGF
Sbjct:   10 TLLPSESMKVISESVGISQMSEETCQLLAQEVSFRIKEVTQDALKFMHVGKRQKLTPSDIDAALKLKNVEPIYGF 84          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_HUMAN (Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.050e-36
Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712
            P RF    G R+L++ ++K+V+  D+I  PLPR PLD  +  HWL+IEG QP IPEN P         +A                       A  ++G   E+K     +G P+ +K    H LS E QLY+ +ITE  V   ++    +AL S+ATD GL+ ++P F+ F+++ V
Sbjct:   93 PFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDPGLYQMLPRFSTFISEGV 267          

HSP 2 Score: 78.1814 bits (191), Expect = 1.050e-36
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   34 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGF 273
            EE+K+    +++P E+++V+A+S+GI+    +    L  +V YRI+EI Q+A+K M   +R  LTT D+D ALKL+ VEP+YGF
Sbjct:    3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGF 86          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6_DROME (Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.942e-32
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  287 PLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-----------------------VQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEV 712
            P RF    G R+L + +DK+++  ++      + PLD ++  HW  +EGVQP +PEN P                         A   P+ G  ++ K+   + +K    H LS E QLY+ +ITE  V  SD     +AL SL +D GLH ++P    F+A+ V
Sbjct:  100 PFRFASG-GGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHVKQLATHELSVEQQLYYKEITEACVG-SDEPRRGEALQSLGSDPGLHEMLPRMCTFIAEGV 262          

HSP 2 Score: 74.7146 bits (182), Expect = 6.942e-32
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   49 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFAS 279
            S +  E+++VIA+SIG+ + S DAA  LA DV  +++ I+Q+A K M H++R  L+  D+D +LK+R VEP YGF +
Sbjct:   19 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVA 95          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6L_MOUSE (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.006e-15
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   34 EEEKMSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFAS 279
            EE +   +P+E+V ++A+S G+   S + A  LA DV YR+RE  Q + + M+H++R  LT +D + AL+  +VE V G+ S
Sbjct:    5 EERRFVEIPRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGS 85          

HSP 2 Score: 40.817 bits (94), Expect = 2.006e-15
Identity = 31/129 (24.03%), Postives = 60/129 (46.51%), Query Frame = 2
Query:  320 DLFYLDDKDVEFKDVIEAP-LPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVA 703
            DL++ +D++V   ++  A  +P+   +T++  H   ++G   + P+ +   A+++                        L+ +L  Y+ ++T  AV   D  L K AL  L T+S +  L+PYF Y V+
Sbjct:   98 DLYFPEDREVSLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS------------------------LTDDLLKYYQQVTR-AVLGDDPQLMKVALQDLQTNSKIAALLPYFVYVVS 201          
BLAST of FC932447 vs. ExPASy Swiss-Prot
Match: TAF6L_HUMAN (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.430e-15
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   34 EEEKMSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRTVEPVYGFAS 279
            EE +   +P+E+V ++A+S G+   S + A  LA DV YR+RE  Q + + M+H++R  LT +D + AL+  +VE V G+ S
Sbjct:    5 EERRFVEIPRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGS 85          

HSP 2 Score: 38.891 bits (89), Expect = 7.430e-15
Identity = 30/129 (23.26%), Postives = 60/129 (46.51%), Query Frame = 2
Query:  320 DLFYLDDKDVEFKDVIEAP-LPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVA 703
            +L++ +D++V   ++  A  +P+   +T++  H   ++G   + P+ +   A+++                        L+ +L  Y+ ++T  AV   D  L K AL  L T+S +  L+PYF Y V+
Sbjct:   98 ELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS------------------------LTDDLLKYYHQVTR-AVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVS 201          
The following BLAST results are available for this feature:
BLAST of FC932447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TAF6_SCHPO7.916e-4442.60Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_YEAST2.673e-4134.81Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_RAT6.185e-3735.03Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_MOUSE6.185e-3735.03Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_XENLA8.065e-3736.63Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_HUMAN1.050e-3634.46Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_DROME6.942e-3231.52Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6L_MOUSE2.006e-1539.02TAF6-like RNA polymerase II p300/CBP-associated fa... [more]
TAF6L_HUMAN7.430e-1539.02TAF6-like RNA polymerase II p300/CBP-associated fa... [more]
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Properties
Property NameValue
Genbank descriptionC34208F11EF PostHarveN Citrus clementina cDNA clone C34208F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932447 ID=FC932447; Name=FC932447; organism=Citrus clementina; type=EST; length=734bp
GGCAAGTAGAAAATGAAAAACTACTAAAAGCTAGAAGAAGAGAAAATGAG
TATCGTACCAAAGGAAACAGTAGAGGTTATAGCGCAAAGCATTGGTATTA
GTAATTTTTCTACCGATGCAGCGCTTGCCCTTGCTCCTGACGTCGAATAT
CGTATACGCGAAATCATGCAGGAGGCAATTAAATGCATGCGGCATTCAAG
GAGAACCACATTGACAACTGATGATGTTGATGAAGCTCTTAAATTAAGAA
CCGTGGAGCCGGTGTATGGTTTTGCCTCAGGGGGGTCCTTTGCGGTTCAG
AAGAGCTATTGGGTATAGGGATTTGTTTTACCTTGATGACAAGGATGTGG
AATTTAAAGATGTGATTGAAGCTCCTTTACCTCGAGCACCACTTGATACA
TCAATTGTCTGTCACTGGCTTGCTATTGAAGGAGTACAACCTGTAATCCC
AGAAAACGCTCCGGTGCAAGCAATTGCTGCTCCTTCTAATGGCACAAACA
ATGAACAGAAAGATGGGCTTCCTGTTGAGATTAAATTACCAGTAAAGCAT
ATATTGTCTAGGGAACTTCAGCTGTACTTCGATAAAATCACTGAGCTTGC
TGTGAGTAGGTCCGATTCAGTCCTTTTCAAACAAGCGTTAGTGAGCTTGG
CCACAGACTCAGGACTCCATCCATTGGTTCCTTATTTCACATACTTTGTA
GCTGATGAGGTTTCTCGTGGTCTGAATAATATTC
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