FC932448

Overview
NameFC932448
Unique NameFC932448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932448_ssr153 microsatellite FC932448_ssr153:153..170. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:118..866. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.503e-74
Identity = 144/217 (66.36%), Postives = 162/217 (74.65%), Query Frame = 1
Query:   49 MAVLTKNTATRLPLLL-SQRAAC---LHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 687
            MA++T+NTATRLPL+L S RAA    LHT++P                              G+SKTAEFVISK+DD++N+ RRGSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+NRR+D  +
Sbjct:    1 MAMITRNTATRLPLVLQSHRAAAVSHLHTSLPALSPATTPTSYTRPGPPSTSAPPP------GLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLH 211          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.059e-73
Identity = 143/220 (65.00%), Postives = 160/220 (72.73%), Query Frame = 1
Query:   49 MAVLTKNTATRLPLLL-SQRAAC------LHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 687
            MA++T+NTATRLPLLL SQRA        LHT++P                              G+SK AEFVISK+DD++N+ R GSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+NRR+D  +
Sbjct:    1 MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPP------GLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLH 214          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.989e-69
Identity = 132/194 (68.04%), Postives = 144/194 (74.23%), Query Frame = 1
Query:  100 QRAACLHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            QRAA +HTT+P                              GISK AE+VISK+DD++N+ RRGSIWPM+FGLACCAVEMMH GAARYD DRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYGILQLQKK+NRR+DL
Sbjct:   19 QRAATIHTTLPSLSQQPASSPATSGGAQPPSMNTP-----AGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDL 207          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.355e-62
Identity = 110/149 (73.83%), Postives = 126/149 (84.56%), Query Frame = 1
Query:  241 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 687
            EF++SK+D++VN+ R+GS+WPM+FGLACCAVEMMH+ A+RYDLDRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWV+S GSCAN              CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+ R R   Y
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKTLY 178          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.761e-60
Identity = 107/151 (70.86%), Postives = 124/151 (82.12%), Query Frame = 1
Query:  229 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+S GSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.761e-60
Identity = 107/151 (70.86%), Postives = 124/151 (82.12%), Query Frame = 1
Query:  229 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+S GSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.761e-60
Identity = 107/151 (70.86%), Postives = 124/151 (82.12%), Query Frame = 1
Query:  229 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+S GSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.761e-60
Identity = 107/151 (70.86%), Postives = 124/151 (82.12%), Query Frame = 1
Query:  229 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+S GSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.761e-60
Identity = 107/151 (70.86%), Postives = 124/151 (82.12%), Query Frame = 1
Query:  229 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+S GSCAN              CDRIVPVDIYVPGCPPTAEALLYGILQLQKK+ R + L
Sbjct:   60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRL 210          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.911e-60
Identity = 106/151 (70.20%), Postives = 124/151 (82.12%), Query Frame = 1
Query:  229 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+S GSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:   57 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
The following BLAST results are available for this feature:
BLAST of FC932448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_BRAOL3.503e-7466.36NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH5.059e-7365.00NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_SOLTU1.989e-6968.04NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM2.355e-6273.83NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NDUS7_PONPY3.761e-6070.86NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR3.761e-6070.86NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN3.761e-6070.86NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO3.761e-6070.86NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_BOVIN3.761e-6070.86NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PONAB4.911e-6070.20NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionC34208F12EF PostHarveN Citrus clementina cDNA clone C34208F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932448 ID=FC932448; Name=FC932448; organism=Citrus clementina; type=EST; length=745bp
GGCCGGGGACACCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTAT
GGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACC
GCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGA
TCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGG
CCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGG
TGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCC
CTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATG
GCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGT
CATTTCTACGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTT
ACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTT
CCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCAACT
GCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGTGGACCAAGT
GAGAAAAGCTCAAGTGGCTCCTTGGCAGTTACACTCGACTATTAT
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